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The map label for this gene is lptF [H]

Identifier: 54295469

GI number: 54295469

Start: 2918166

End: 2919245

Strand: Reverse

Name: lptF [H]

Synonym: lpl2555

Alternate gene names: 54295469

Gene position: 2919245-2918166 (Counterclockwise)

Preceding gene: 54295472

Following gene: 54295468

Centisome position: 87.25

GC content: 42.13

Gene sequence:

>1080_bases
GTGATAATTTTTCGTTATTTGACTAAAGAAGTGTTTCTTACTTTAATCGCATTAACCGCGATATTAGTCCTTATTTTCAT
GAGTAATCAATTCATACAATACTTAAATCGCGCTGCTTCTGGTTCAATTCCTGGTTTTGTGATTATGAAGTTGTTGATGT
TGGAGTTGCCAAATTTAATGGGCCTGTTACTGCCCCTGGGGTTTTATATCGCTCTTTTATTGGCGTATGGCCGCTTATAT
GCCGAAAGCGAAATGACGGTTCTGCGAGCTTGCGGTTATGGTCCCAGGCAATTGCTGAAACACAGCTTTGCCATGGCTAC
TGTTGTGTTGGTAGTAGTTGCCATTGTAGTGATTTGGGCAAGTCCTGTGATTGCTGTTGAACGCACCAAGTTAATACGTT
CTACAGGAATCAAAACTTTAATTCAAACGATTATGCCTGGACGCTTTCATGCCATTAATAGCGGTCAGCAAATCTTTTAT
GTGCAATCCATGAATCGTGATCATTCCCAGGCAGAACAGATATTCATGGCAAAACATAGCGTTCAGGATAATAAGCTATT
ATGGGATGTGTTGTGGGCAGATAAAGCATTTGCTGAGGTTAATCCTCAAACAGGCGAGGAATACATCGTGCTGCAAAATG
GCAAGGAATATCAAGGTGTTCCGGGGCATGCCGATTACCAGATCGCAGAATTTGCAAGCTATAAATCCAAATTACCCAAC
CCGACTGTTGTTATGCATGATGATGCTCGCACTGCAAAAACCAGAGACTTATGGCCTTTGAACAATCATGATTTGAAAAA
GGCGGCTGAATTACAGTGGCGTATTTCCATTCCTTTAATGGTTTTGACCTTGACTCTGGTTGCCGTTCCACTTAGTCGTG
TCAGCCCTCGTTCTGGAAAATATTCGAAACTTTTGCCAGCCATCATTATCTATATTTTTTATGCTAATTTTATGTTTGTT
TCTCGTGATGCGATTGCTACCGGGAAGATTCCCTGGTGGATAGGGATGTGGTGGGTACACGTGGCGGTTGCCATTCTCGG
CATCCTATTCATTTGGCGAAATCAGGTGAAGCTTGCATGA

Upstream 100 bases:

>100_bases
TATTTTTAAATAGGCTGTCTTGAATTATCATGATGGGTTCTTTCATATGTTATTCTGAAAGAATTGAATTAATTGATAAG
GTCCTCTGTAGGGTATTGTA

Downstream 100 bases:

>100_bases
GCAGAAAAATACTTGATCGTTATATTGCCAAAACGGTTTTATCTGCAATCGGCTTGGTGACTTTGATGCTGGTCGGTTTA
CAGATCTTTATTTTGTTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MIIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMGLLLPLGFYIALLLAYGRLY
AESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVVIWASPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFY
VQSMNRDHSQAEQIFMAKHSVQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN
PTVVMHDDARTAKTRDLWPLNNHDLKKAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGKYSKLLPAIIIYIFYANFMFV
SRDAIATGKIPWWIGMWWVHVAVAILGILFIWRNQVKLA

Sequences:

>Translated_359_residues
MIIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMGLLLPLGFYIALLLAYGRLY
AESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVVIWASPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFY
VQSMNRDHSQAEQIFMAKHSVQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN
PTVVMHDDARTAKTRDLWPLNNHDLKKAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGKYSKLLPAIIIYIFYANFMFV
SRDAIATGKIPWWIGMWWVHVAVAILGILFIWRNQVKLA
>Mature_359_residues
MIIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLMGLLLPLGFYIALLLAYGRLY
AESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVVIWASPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFY
VQSMNRDHSQAEQIFMAKHSVQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN
PTVVMHDDARTAKTRDLWPLNNHDLKKAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGKYSKLLPAIIIYIFYANFMFV
SRDAIATGKIPWWIGMWWVHVAVAILGILFIWRNQVKLA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=355, Percent_Identity=29.2957746478873, Blast_Score=136, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 40667; Mature: 40667

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLM
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
GLLLPLGFYIALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVVIWA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
SPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHS
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHC
VQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN
CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCC
PTVVMHDDARTAKTRDLWPLNNHDLKKAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGK
CEEEEECCCCCCCCCCCCCCCCCHHHHHHHEEEEECCHHHHHHHHHHHHHHHHCCCCCCC
YSKLLPAIIIYIFYANFMFVSRDAIATGKIPWWIGMWWVHVAVAILGILFIWRNQVKLA
HHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIIFRYLTKEVFLTLIALTAILVLIFMSNQFIQYLNRAASGSIPGFVIMKLLMLELPNLM
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
GLLLPLGFYIALLLAYGRLYAESEMTVLRACGYGPRQLLKHSFAMATVVLVVVAIVVIWA
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
SPVIAVERTKLIRSTGIKTLIQTIMPGRFHAINSGQQIFYVQSMNRDHSQAEQIFMAKHS
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHC
VQDNKLLWDVLWADKAFAEVNPQTGEEYIVLQNGKEYQGVPGHADYQIAEFASYKSKLPN
CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCC
PTVVMHDDARTAKTRDLWPLNNHDLKKAAELQWRISIPLMVLTLTLVAVPLSRVSPRSGK
CEEEEECCCCCCCCCCCCCCCCCHHHHHHHEEEEECCHHHHHHHHHHHHHHHHCCCCCCC
YSKLLPAIIIYIFYANFMFVSRDAIATGKIPWWIGMWWVHVAVAILGILFIWRNQVKLA
HHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]