| Definition | Legionella pneumophila str. Lens, complete genome. |
|---|---|
| Accession | NC_006369 |
| Length | 3,345,687 |
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The map label for this gene is dacB [H]
Identifier: 54295426
GI number: 54295426
Start: 2866209
End: 2868002
Strand: Reverse
Name: dacB [H]
Synonym: lpl2512
Alternate gene names: 54295426
Gene position: 2868002-2866209 (Counterclockwise)
Preceding gene: 54295427
Following gene: 54295425
Centisome position: 85.72
GC content: 43.14
Gene sequence:
>1794_bases ATGAAAAGGACGTTGACTGGGGCATTCATATGGGCAGTATGGTCACTGTCATCTCATGCGGCTAGTATGCAGTTCGAGGT AGATAAATTAATTAATCGGTTAAACCCTCGTGTGAACCTGGGGATAGTAGTGACCGATCTAACCTCGGGCGAGACGCTAT ATAAACGCAATGCCAATCGTTTGTATATTCCTGCCAGCAACATGAAGCTTTTTTCCGAGGCAGCGGCTCTGATGGCTTTG GGTCCAGACTACCAATTCAAGAATCAACTCAGTACGAGCGCCAATCAATTACAACAAGGTGTTTTGCACGGAAACTTGTA TTTACATCTCAGCGGCGATCCTTCGTTTAGCAGAGAAGATTTAAAGACGTTGCTTTCTTCACTCAAGGATTGGAATATCA CAACCATTCAAGGTAATGTGATCATTGACAGTAGCCTGATGTCCATTCCCGCCTATCCCCCAGGCTGGCTAACTTCTGAT TTATCTTATAGTTATGGTGCGCCAATAGCACCTTTGATGGTTGATTCCAACCGATTAACAATCACGGTCAACCCCGGGGC TAAAGCAGGCGCTCCTGCTATTGTTGAAGTAGATGATGGCGGCGGTACTATTAACCTGAATAATCAAGCGACCACGAAGG CGAGTGAGAAAGGATGTGGTGTAGGGTTTTATTTGGATCCTGAGAACAATTTAACGGTAAGAGGCTGTGTTGGATTAGGG CAATGGGCTGTTCAGCAACGCATCGCTATAAAGAATCCTTTTGTTTATGCCCAGGGGATGATTGTGAGTGAGCTTGCCAA GTCTAATATTAAATTAAATGGACAGGTTTTGCTTGGAAGAGCGCCTGCTGGTACTTTATTAATTGCCACTCGCTATTCAA AGCCAATTTCCCAACTGATGGCAGATACTTTAAAGCCTTCTGATAATTTATATGCTGATAGTTTGTACTTGCATGCTGCT GCCAAAATTAAGGGTAGTCCTGTAGATTGGAAGCAAGCACAGCCAGTAATTAAAAATTTTTTGCAGCAACAAACAGGAAT CGATTTAAAAGACTCGAATTTTACAGATGGTTCTGGATTATCACGTTATAATTTGGTAACTCCAGCGCAAACCATGGCGC TTTTAAAATTCTTGTATCAACGTTTTCCATTATCTTATGAATACATTGCTGCCTTACCCATCTCTGGTCGGGATGGTACT TTGCAAAAACGGTTTAAAACCCCAAATCAACAAGGATTTGTGCGAGCCAAAACCGGGACGATGACGGGTATGAACAGTTT ATCCGGTTACTTGTATACCGCTAATGGCCATACTTTGGCCTTTGCTATGTATATCAATAGATTACCCGGAAAACCGGCTG GGCCAGGACGTCCATTATTAGATGCATTATGCACTTATTTCTTGCAGCAAAGTCCAACAAGCAGTCGACTGGCACGGGTA TTATCTCCTCATAGTCGCATTAAGTTCCAATTTAATCCTACACAAATTGAGTTACAGCGAGTTCATCAAGCCAAATGGAG GCGTTTGGAAACGGCAGTGAGGCAGGTCTTGAGAGGACAGGATGTAAATGTGGTTTACCGGGGCAATGAATTAATCGTGA CAGACAATCAGTCTAATGCGAATAGCGTTTGGAAAGCTTTACAATCAATTAGCAAGAAATATTCATTCGCCGTAGCCTTG TCTTCTAAAGCGATGCCTGTTACACCATCGGGAAAACCTTTGCTTCTTTGGGTGCAAGCACCTTTATCTGAAAATACGGC AGAGAGAACCTGGATAATTCGGGAAGCGGTATAA
Upstream 100 bases:
>100_bases TATGATTAGCTTATTGGAACTAACTCAGAAATTGTCACTATGTATCAAACAATTCAACCTGATTTATATTGTGAAATTCA ATGTTAAGGAAAATATTTAA
Downstream 100 bases:
>100_bases CCCGAGTTTGATAATTAAAAGAAAAACCAGCCTCGGATTATTAAAATGCAATGCGGGGCTATTCCAGCGTTATCTCGAAC CGTTTGGGCTGAGGAGGTAT
Product: hypothetical protein
Products: NA
Alternate protein names: DD-carboxypeptidase; DD-peptidase; D-alanyl-D-alanine endopeptidase; DD-endopeptidase; Penicillin-binding protein 4; PBP-4 [H]
Number of amino acids: Translated: 597; Mature: 597
Protein sequence:
>597_residues MKRTLTGAFIWAVWSLSSHAASMQFEVDKLINRLNPRVNLGIVVTDLTSGETLYKRNANRLYIPASNMKLFSEAAALMAL GPDYQFKNQLSTSANQLQQGVLHGNLYLHLSGDPSFSREDLKTLLSSLKDWNITTIQGNVIIDSSLMSIPAYPPGWLTSD LSYSYGAPIAPLMVDSNRLTITVNPGAKAGAPAIVEVDDGGGTINLNNQATTKASEKGCGVGFYLDPENNLTVRGCVGLG QWAVQQRIAIKNPFVYAQGMIVSELAKSNIKLNGQVLLGRAPAGTLLIATRYSKPISQLMADTLKPSDNLYADSLYLHAA AKIKGSPVDWKQAQPVIKNFLQQQTGIDLKDSNFTDGSGLSRYNLVTPAQTMALLKFLYQRFPLSYEYIAALPISGRDGT LQKRFKTPNQQGFVRAKTGTMTGMNSLSGYLYTANGHTLAFAMYINRLPGKPAGPGRPLLDALCTYFLQQSPTSSRLARV LSPHSRIKFQFNPTQIELQRVHQAKWRRLETAVRQVLRGQDVNVVYRGNELIVTDNQSNANSVWKALQSISKKYSFAVAL SSKAMPVTPSGKPLLLWVQAPLSENTAERTWIIREAV
Sequences:
>Translated_597_residues MKRTLTGAFIWAVWSLSSHAASMQFEVDKLINRLNPRVNLGIVVTDLTSGETLYKRNANRLYIPASNMKLFSEAAALMAL GPDYQFKNQLSTSANQLQQGVLHGNLYLHLSGDPSFSREDLKTLLSSLKDWNITTIQGNVIIDSSLMSIPAYPPGWLTSD LSYSYGAPIAPLMVDSNRLTITVNPGAKAGAPAIVEVDDGGGTINLNNQATTKASEKGCGVGFYLDPENNLTVRGCVGLG QWAVQQRIAIKNPFVYAQGMIVSELAKSNIKLNGQVLLGRAPAGTLLIATRYSKPISQLMADTLKPSDNLYADSLYLHAA AKIKGSPVDWKQAQPVIKNFLQQQTGIDLKDSNFTDGSGLSRYNLVTPAQTMALLKFLYQRFPLSYEYIAALPISGRDGT LQKRFKTPNQQGFVRAKTGTMTGMNSLSGYLYTANGHTLAFAMYINRLPGKPAGPGRPLLDALCTYFLQQSPTSSRLARV LSPHSRIKFQFNPTQIELQRVHQAKWRRLETAVRQVLRGQDVNVVYRGNELIVTDNQSNANSVWKALQSISKKYSFAVAL SSKAMPVTPSGKPLLLWVQAPLSENTAERTWIIREAV >Mature_597_residues MKRTLTGAFIWAVWSLSSHAASMQFEVDKLINRLNPRVNLGIVVTDLTSGETLYKRNANRLYIPASNMKLFSEAAALMAL GPDYQFKNQLSTSANQLQQGVLHGNLYLHLSGDPSFSREDLKTLLSSLKDWNITTIQGNVIIDSSLMSIPAYPPGWLTSD LSYSYGAPIAPLMVDSNRLTITVNPGAKAGAPAIVEVDDGGGTINLNNQATTKASEKGCGVGFYLDPENNLTVRGCVGLG QWAVQQRIAIKNPFVYAQGMIVSELAKSNIKLNGQVLLGRAPAGTLLIATRYSKPISQLMADTLKPSDNLYADSLYLHAA AKIKGSPVDWKQAQPVIKNFLQQQTGIDLKDSNFTDGSGLSRYNLVTPAQTMALLKFLYQRFPLSYEYIAALPISGRDGT LQKRFKTPNQQGFVRAKTGTMTGMNSLSGYLYTANGHTLAFAMYINRLPGKPAGPGRPLLDALCTYFLQQSPTSSRLARV LSPHSRIKFQFNPTQIELQRVHQAKWRRLETAVRQVLRGQDVNVVYRGNELIVTDNQSNANSVWKALQSISKKYSFAVAL SSKAMPVTPSGKPLLLWVQAPLSENTAERTWIIREAV
Specific function: Not involved in transpeptidation but exclusively catalyzes a DD-carboxypeptidase and DD-endopeptidase reaction [H]
COG id: COG2027
COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S13 family [H]
Homologues:
Organism=Escherichia coli, GI1789573, Length=438, Percent_Identity=30.1369863013699, Blast_Score=212, Evalue=6e-56,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR000667 [H]
Pfam domain/function: PF02113 Peptidase_S13 [H]
EC number: =3.4.16.4 [H]
Molecular weight: Translated: 65549; Mature: 65549
Theoretical pI: Translated: 10.21; Mature: 10.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRTLTGAFIWAVWSLSSHAASMQFEVDKLINRLNPRVNLGIVVTDLTSGETLYKRNANR CCCEEHHHHHHHHHHHHCCHHHEEEEHHHHHHHCCCCEEEEEEEEECCCCCCCEECCCCE LYIPASNMKLFSEAAALMALGPDYQFKNQLSTSANQLQQGVLHGNLYLHLSGDPSFSRED EEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEECEEEEEECCCCCCCHHH LKTLLSSLKDWNITTIQGNVIIDSSLMSIPAYPPGWLTSDLSYSYGAPIAPLMVDSNRLT HHHHHHHHCCCCEEEEECCEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEE ITVNPGAKAGAPAIVEVDDGGGTINLNNQATTKASEKGCGVGFYLDPENNLTVRGCVGLG EEECCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC QWAVQQRIAIKNPFVYAQGMIVSELAKSNIKLNGQVLLGRAPAGTLLIATRYSKPISQLM HHHHHHHHHHCCCEEEECCHHHHHHHHCCCEECCEEEEECCCCCEEEEEECCCHHHHHHH ADTLKPSDNLYADSLYLHAAAKIKGSPVDWKQAQPVIKNFLQQQTGIDLKDSNFTDGSGL HHHCCCCCCEEECEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SRYNLVTPAQTMALLKFLYQRFPLSYEYIAALPISGRDGTLQKRFKTPNQQGFVRAKTGT CEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCEEEEECCC MTGMNSLSGYLYTANGHTLAFAMYINRLPGKPAGPGRPLLDALCTYFLQQSPTSSRLARV CCCHHHCCCEEEECCCCEEEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH LSPHSRIKFQFNPTQIELQRVHQAKWRRLETAVRQVLRGQDVNVVYRGNELIVTDNQSNA HCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCCH NSVWKALQSISKKYSFAVALSSKAMPVTPSGKPLLLWVQAPLSENTAERTWIIREAV HHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCHHEEEEEECC >Mature Secondary Structure MKRTLTGAFIWAVWSLSSHAASMQFEVDKLINRLNPRVNLGIVVTDLTSGETLYKRNANR CCCEEHHHHHHHHHHHHCCHHHEEEEHHHHHHHCCCCEEEEEEEEECCCCCCCEECCCCE LYIPASNMKLFSEAAALMALGPDYQFKNQLSTSANQLQQGVLHGNLYLHLSGDPSFSRED EEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCEEECEEEEEECCCCCCCHHH LKTLLSSLKDWNITTIQGNVIIDSSLMSIPAYPPGWLTSDLSYSYGAPIAPLMVDSNRLT HHHHHHHHCCCCEEEEECCEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEE ITVNPGAKAGAPAIVEVDDGGGTINLNNQATTKASEKGCGVGFYLDPENNLTVRGCVGLG EEECCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCC QWAVQQRIAIKNPFVYAQGMIVSELAKSNIKLNGQVLLGRAPAGTLLIATRYSKPISQLM HHHHHHHHHHCCCEEEECCHHHHHHHHCCCEECCEEEEECCCCCEEEEEECCCHHHHHHH ADTLKPSDNLYADSLYLHAAAKIKGSPVDWKQAQPVIKNFLQQQTGIDLKDSNFTDGSGL HHHCCCCCCEEECEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SRYNLVTPAQTMALLKFLYQRFPLSYEYIAALPISGRDGTLQKRFKTPNQQGFVRAKTGT CEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHCCCCCCCEEEEECCC MTGMNSLSGYLYTANGHTLAFAMYINRLPGKPAGPGRPLLDALCTYFLQQSPTSSRLARV CCCHHHCCCEEEECCCCEEEEEEEHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHH LSPHSRIKFQFNPTQIELQRVHQAKWRRLETAVRQVLRGQDVNVVYRGNELIVTDNQSNA HCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCCH NSVWKALQSISKKYSFAVALSSKAMPVTPSGKPLLLWVQAPLSENTAERTWIIREAV HHHHHHHHHHHHHEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCHHEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2040429; 9278503; 2046551 [H]