Click here to switch to the map view.

The map label for this gene is 54295301

Identifier: 54295301

GI number: 54295301

Start: 2717127

End: 2717606

Strand: Reverse

Name: 54295301

Synonym: lpl2386

Alternate gene names: NA

Gene position: 2717606-2717127 (Counterclockwise)

Preceding gene: 54295302

Following gene: 54295299

Centisome position: 81.23

GC content: 37.5

Gene sequence:

>480_bases
ATGAGTCTTATAAAAATCTTAGGTATAGGCTCACCTTTTGGTGATGATCAGGTGGGATGTTTGGCTGCTGATTGTCTTAA
GGCAGAATTGTCAAAAGAGCAATACATTAGTAAATCAGTGTGCATAGAGTCTCACGATCGGCCTGGTCTTCGTTTGATTG
AATTGATGAATTCTGCCAAAGCCGCCTTTTTAATTGATGCTGTAAAATCCGGATGCGCCATAGGTACAATCCATCGCTTA
AAAAATAAAGAGATTTATGCATTTAAAAATATGTTATCGACCCATGAAATGGGGGTGGCTCAAGCTCTTCAATTAGGCCA
TAGCCTTAATGCTCTGCCAGAGCATATTATTTTATATGGGATTGAAATTGATAGCATCGCTTTTAATGCGATGCTGTCTA
AACCAGTTGAAAAAGCAATGAGGGCAGTTGTTATCAAAATAAAAAAGGAACTCAAGGATATGTTAAATCATATCGTATGA

Upstream 100 bases:

>100_bases
AAGAAGAAGCGCTCAGGTATTTTAGTGAGATGATCATTCGTAATTATGATCCGTGTATTTCATGCTCTACACATTTTCTG
AATTTAAAAATTGATAGAAT

Downstream 100 bases:

>100_bases
GTTTCTTTTCATAATCAACTTATAATACTTAAATAGTAAGACTCGAGTTAGTTGCAGCCTTAATTTTATCTGCAGTCCAA
AGGTTTAGCGTTGAATGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: Hydrogenase Expression/Formation Protein; Peptidase; VhtD Hydrogenase Expression/Formation Protein

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MSLIKILGIGSPFGDDQVGCLAADCLKAELSKEQYISKSVCIESHDRPGLRLIELMNSAKAAFLIDAVKSGCAIGTIHRL
KNKEIYAFKNMLSTHEMGVAQALQLGHSLNALPEHIILYGIEIDSIAFNAMLSKPVEKAMRAVVIKIKKELKDMLNHIV

Sequences:

>Translated_159_residues
MSLIKILGIGSPFGDDQVGCLAADCLKAELSKEQYISKSVCIESHDRPGLRLIELMNSAKAAFLIDAVKSGCAIGTIHRL
KNKEIYAFKNMLSTHEMGVAQALQLGHSLNALPEHIILYGIEIDSIAFNAMLSKPVEKAMRAVVIKIKKELKDMLNHIV
>Mature_158_residues
SLIKILGIGSPFGDDQVGCLAADCLKAELSKEQYISKSVCIESHDRPGLRLIELMNSAKAAFLIDAVKSGCAIGTIHRLK
NKEIYAFKNMLSTHEMGVAQALQLGHSLNALPEHIILYGIEIDSIAFNAMLSKPVEKAMRAVVIKIKKELKDMLNHIV

Specific function: Unknown

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17415; Mature: 17284

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLIKILGIGSPFGDDQVGCLAADCLKAELSKEQYISKSVCIESHDRPGLRLIELMNSAK
CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
AAFLIDAVKSGCAIGTIHRLKNKEIYAFKNMLSTHEMGVAQALQLGHSLNALPEHIILYG
HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHEEEC
IEIDSIAFNAMLSKPVEKAMRAVVIKIKKELKDMLNHIV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLIKILGIGSPFGDDQVGCLAADCLKAELSKEQYISKSVCIESHDRPGLRLIELMNSAK
CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
AAFLIDAVKSGCAIGTIHRLKNKEIYAFKNMLSTHEMGVAQALQLGHSLNALPEHIILYG
HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHEEEC
IEIDSIAFNAMLSKPVEKAMRAVVIKIKKELKDMLNHIV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA