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The map label for this gene is 54295211

Identifier: 54295211

GI number: 54295211

Start: 2610374

End: 2611462

Strand: Reverse

Name: 54295211

Synonym: lpl2293

Alternate gene names: NA

Gene position: 2611462-2610374 (Counterclockwise)

Preceding gene: 54295215

Following gene: 54295205

Centisome position: 78.05

GC content: 34.71

Gene sequence:

>1089_bases
ATGAAAACATTTTTTATCTTAATATTTTATTTGCTACGCTCATTTGCGATAATGTTATCACCTGGTGGAACCAAAAAGCT
GGTAGCAGAAAACATTATTTTGCGAAAGCAATTAATCATAACAAATCGTACTAGAAAAAAAGCACCCAATTTAACAAAAT
GGGAACGCTTACTTTTTGCATTTTTATCTGGAATTGTTGGTATACAAAGATTGTTCAAAACGGCTGTCGTGATTAAACCA
GAAACCTTACTGAAATTGCATAAAAATCTAGTCAATAAAAAATATAGCTCCTTATTTTCTAGAAATTCAAAGCGTAAACC
TGGGCTAAAAGGACCAAACCAAGACATTATTAATGCTGTTATTGCCATGAAACAGCGTAACCCTAGATTTGGATGCAGGC
GCATTGCAATGCAAATGAACAATATATTTGGACTAAATATAGATAAGGATGTAGTTAGGCGTATTCTTGCAAAATTCTAT
AGACCAACATCAGGGGATAAGGGACCTTCTTGGCTAACCTTTATTGGTCATATGAAAGATAGCTTATGGTCTATTGATTT
TTTCAGATGCGAATCCATCAATTTAAAATCATTTTGGGTGATGATTGTCATGGACCAGTTTAGCAGACGGATCATAGGTT
TTGCTTCTCACCAAGGTGATTTACACGGCCTTGCTATTTGCTGCATGTTTAATAAAATTATATCCGAAATAAAGCCACCT
AAATACCTGTCTTCTGACAATGATCCATTGTTTCAATTTCATCGTTGGCAAGCGAACTTAAGAATTCTGGAAATTGAAGA
AATTAAAACAATACCATATACTCCAATTTCACATCCTTTTGTAGAAAGACTCATTCGAATCTGTCGAAACGAACTACTTG
ATCAAACACTATTTTGGACTAAGTCAGATCTAGCAGCAAAGTTTGCATTATTTCAAACATATTTCAATGAAAAACGCGCA
CATATGGGAATAAATGGCGATACGCCCAACCAAATTGTTAATCATGACAAGTCTCAAGTGATTGATATTAAAAATTACCG
TTGGCAAAAACTCTGTCGCGGCTTATTTCAGCTGCCTATTGCTGCTTGA

Upstream 100 bases:

>100_bases
AGATATTGCAGGGCTATAGGTGTAAGTAGCGAATTGGTGTGCAGAACAATTTAACCCAGTTAGACTTGAATAATAATTGC
TTTATCAACATATCGTAAAC

Downstream 100 bases:

>100_bases
ATACGATTTAGCGACTTACAGGCTTATGAGATAATAAAAAGACCTATCGATAGGGATGAATCCTGGTATAAAAAATTGTG
GAATATTAATCTCCCTGATG

Product: hypothetical protein

Products: NA

Alternate protein names: Integrase Catalytic Region; LOW QUALITY PROTEIN Integrase

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MKTFFILIFYLLRSFAIMLSPGGTKKLVAENIILRKQLIITNRTRKKAPNLTKWERLLFAFLSGIVGIQRLFKTAVVIKP
ETLLKLHKNLVNKKYSSLFSRNSKRKPGLKGPNQDIINAVIAMKQRNPRFGCRRIAMQMNNIFGLNIDKDVVRRILAKFY
RPTSGDKGPSWLTFIGHMKDSLWSIDFFRCESINLKSFWVMIVMDQFSRRIIGFASHQGDLHGLAICCMFNKIISEIKPP
KYLSSDNDPLFQFHRWQANLRILEIEEIKTIPYTPISHPFVERLIRICRNELLDQTLFWTKSDLAAKFALFQTYFNEKRA
HMGINGDTPNQIVNHDKSQVIDIKNYRWQKLCRGLFQLPIAA

Sequences:

>Translated_362_residues
MKTFFILIFYLLRSFAIMLSPGGTKKLVAENIILRKQLIITNRTRKKAPNLTKWERLLFAFLSGIVGIQRLFKTAVVIKP
ETLLKLHKNLVNKKYSSLFSRNSKRKPGLKGPNQDIINAVIAMKQRNPRFGCRRIAMQMNNIFGLNIDKDVVRRILAKFY
RPTSGDKGPSWLTFIGHMKDSLWSIDFFRCESINLKSFWVMIVMDQFSRRIIGFASHQGDLHGLAICCMFNKIISEIKPP
KYLSSDNDPLFQFHRWQANLRILEIEEIKTIPYTPISHPFVERLIRICRNELLDQTLFWTKSDLAAKFALFQTYFNEKRA
HMGINGDTPNQIVNHDKSQVIDIKNYRWQKLCRGLFQLPIAA
>Mature_362_residues
MKTFFILIFYLLRSFAIMLSPGGTKKLVAENIILRKQLIITNRTRKKAPNLTKWERLLFAFLSGIVGIQRLFKTAVVIKP
ETLLKLHKNLVNKKYSSLFSRNSKRKPGLKGPNQDIINAVIAMKQRNPRFGCRRIAMQMNNIFGLNIDKDVVRRILAKFY
RPTSGDKGPSWLTFIGHMKDSLWSIDFFRCESINLKSFWVMIVMDQFSRRIIGFASHQGDLHGLAICCMFNKIISEIKPP
KYLSSDNDPLFQFHRWQANLRILEIEEIKTIPYTPISHPFVERLIRICRNELLDQTLFWTKSDLAAKFALFQTYFNEKRA
HMGINGDTPNQIVNHDKSQVIDIKNYRWQKLCRGLFQLPIAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42211; Mature: 42211

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTFFILIFYLLRSFAIMLSPGGTKKLVAENIILRKQLIITNRTRKKAPNLTKWERLLFA
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHH
FLSGIVGIQRLFKTAVVIKPETLLKLHKNLVNKKYSSLFSRNSKRKPGLKGPNQDIINAV
HHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
IAMKQRNPRFGCRRIAMQMNNIFGLNIDKDVVRRILAKFYRPTSGDKGPSWLTFIGHMKD
HHHHCCCCCHHHHHHHHHHHCEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
SLWSIDFFRCESINLKSFWVMIVMDQFSRRIIGFASHQGDLHGLAICCMFNKIISEIKPP
HHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
KYLSSDNDPLFQFHRWQANLRILEIEEIKTIPYTPISHPFVERLIRICRNELLDQTLFWT
CCCCCCCCHHHHHHHHCCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
KSDLAAKFALFQTYFNEKRAHMGINGDTPNQIVNHDKSQVIDIKNYRWQKLCRGLFQLPI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHEEECCCCHHHHHHHHHHHCCC
AA
CC
>Mature Secondary Structure
MKTFFILIFYLLRSFAIMLSPGGTKKLVAENIILRKQLIITNRTRKKAPNLTKWERLLFA
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHH
FLSGIVGIQRLFKTAVVIKPETLLKLHKNLVNKKYSSLFSRNSKRKPGLKGPNQDIINAV
HHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
IAMKQRNPRFGCRRIAMQMNNIFGLNIDKDVVRRILAKFYRPTSGDKGPSWLTFIGHMKD
HHHHCCCCCHHHHHHHHHHHCEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
SLWSIDFFRCESINLKSFWVMIVMDQFSRRIIGFASHQGDLHGLAICCMFNKIISEIKPP
HHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
KYLSSDNDPLFQFHRWQANLRILEIEEIKTIPYTPISHPFVERLIRICRNELLDQTLFWT
CCCCCCCCHHHHHHHHCCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
KSDLAAKFALFQTYFNEKRAHMGINGDTPNQIVNHDKSQVIDIKNYRWQKLCRGLFQLPI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHEEECCCCHHHHHHHHHHHCCC
AA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA