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The map label for this gene is 54295165

Identifier: 54295165

GI number: 54295165

Start: 2564808

End: 2565608

Strand: Reverse

Name: 54295165

Synonym: lpl2245

Alternate gene names: NA

Gene position: 2565608-2564808 (Counterclockwise)

Preceding gene: 54295166

Following gene: 54295164

Centisome position: 76.68

GC content: 43.32

Gene sequence:

>801_bases
ATGAATGAAGATACTATCCGTGATTTTAATCGTAATGGTGCCGTATGTCTTCGCCAATTTTTAAATGCGGAAGAAATTGC
TATTCTAAAAGAAGGAATAGAATTTAATTTATCCTCCTTAAGTCCTCGTGCCAAAATAGCCAGCAGACCCGATGATCCTG
GTCATTTTGTTGAGGATTTTTGCACTTGGCAAAACAATCCTTTTTATCAACGAATTATCTTTGGTACGAATTTGGGAGTA
GCTGCCGCACAAATCATGCAAAGCCAAACAGTCCGGTTGTATCATGATCATTTGTTGGTAAAGGAACCAGGCACACAACA
GGTGACACCCTGGCATCAGGATCAGCCCTATTATAATATTGAGGGCAAGCAAAACTGCAGTTTCTGGATCCCGGTTGATC
CTGTCAGCCGTTCCTCAACTCTGGAATTTGTCGCTGGTTCTCATCTGGGCCCCTGGTTAATGCCAAGAACCTTTTTAGAC
AATCAGGCAAAATGGTTTCCTGAAGGAAGCTTGCAGGAATTGCCTCCTATAGAAGAAGCGCGTGCGAAGTATCCGATTAT
TGGATGGGAAATTGAGCCAGGTGATGTGGTTTGTTTTCATATGCTGACTTTACACATGGCAAGGGGAGTTGAGGGAAGGT
ATAGAAGAAGAGTATTTTCTGTGCGTTTTTTAGGTGATGATATTAAACATGCCCCCAGGGCCTGGCCTACTTCACCTGAT
TTTCCCGGTTTGATGGCCGAAATACCGGCAGGCGCAAGCATGGATCATCCATTATTTCCATGTTTGCCACTCAAAATATA
G

Upstream 100 bases:

>100_bases
AACAGCAAATCGATTCCATGACGGTAGAGCCAGTTAAACATTTGCGAGATGTATTGGAGAAAATGTGAGTTATCAAAAAT
GAATCACACCGGAATATAAA

Downstream 100 bases:

>100_bases
TAAAACGATATATTTTATTTCCCTTCAAAAAATAGCTCATTTTTTCAAGGATGAGATTTTTAAGATTCCTATTCACAACG
GATGTTATTCCAATAAGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: Phytanoyl-CoA Dioxygenase Family Protein; Dioxygenase; Deoxygenase; SnoK-Like Protein; Phytanoyl-CoA Dioxygenase Protein; Phytanoyl-CoA Dioxygenase Superfamily

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MNEDTIRDFNRNGAVCLRQFLNAEEIAILKEGIEFNLSSLSPRAKIASRPDDPGHFVEDFCTWQNNPFYQRIIFGTNLGV
AAAQIMQSQTVRLYHDHLLVKEPGTQQVTPWHQDQPYYNIEGKQNCSFWIPVDPVSRSSTLEFVAGSHLGPWLMPRTFLD
NQAKWFPEGSLQELPPIEEARAKYPIIGWEIEPGDVVCFHMLTLHMARGVEGRYRRRVFSVRFLGDDIKHAPRAWPTSPD
FPGLMAEIPAGASMDHPLFPCLPLKI

Sequences:

>Translated_266_residues
MNEDTIRDFNRNGAVCLRQFLNAEEIAILKEGIEFNLSSLSPRAKIASRPDDPGHFVEDFCTWQNNPFYQRIIFGTNLGV
AAAQIMQSQTVRLYHDHLLVKEPGTQQVTPWHQDQPYYNIEGKQNCSFWIPVDPVSRSSTLEFVAGSHLGPWLMPRTFLD
NQAKWFPEGSLQELPPIEEARAKYPIIGWEIEPGDVVCFHMLTLHMARGVEGRYRRRVFSVRFLGDDIKHAPRAWPTSPD
FPGLMAEIPAGASMDHPLFPCLPLKI
>Mature_266_residues
MNEDTIRDFNRNGAVCLRQFLNAEEIAILKEGIEFNLSSLSPRAKIASRPDDPGHFVEDFCTWQNNPFYQRIIFGTNLGV
AAAQIMQSQTVRLYHDHLLVKEPGTQQVTPWHQDQPYYNIEGKQNCSFWIPVDPVSRSSTLEFVAGSHLGPWLMPRTFLD
NQAKWFPEGSLQELPPIEEARAKYPIIGWEIEPGDVVCFHMLTLHMARGVEGRYRRRVFSVRFLGDDIKHAPRAWPTSPD
FPGLMAEIPAGASMDHPLFPCLPLKI

Specific function: Unknown

COG id: COG5285

COG function: function code Q; Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30343; Mature: 30343

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEDTIRDFNRNGAVCLRQFLNAEEIAILKEGIEFNLSSLSPRAKIASRPDDPGHFVEDF
CCCCCCHHCCCCCHHHHHHHCCHHHHHHHHHCCEECHHCCCCHHHHCCCCCCCHHHHHHH
CTWQNNPFYQRIIFGTNLGVAAAQIMQSQTVRLYHDHLLVKEPGTQQVTPWHQDQPYYNI
HHCCCCCCEEEEEEECCCHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCCCCEEEC
EGKQNCSFWIPVDPVSRSSTLEFVAGSHLGPWLMPRTFLDNQAKWFPEGSLQELPPIEEA
CCCCCCEEEEECCCCCCCCEEEEECCCCCCCHHCCHHHHCCCCCCCCCCCHHHCCCHHHH
RAKYPIIGWEIEPGDVVCFHMLTLHMARGVEGRYRRRVFSVRFLGDDIKHAPRAWPTSPD
HCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHEEEEEECCCHHHHCCCCCCCCCC
FPGLMAEIPAGASMDHPLFPCLPLKI
CCCHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNEDTIRDFNRNGAVCLRQFLNAEEIAILKEGIEFNLSSLSPRAKIASRPDDPGHFVEDF
CCCCCCHHCCCCCHHHHHHHCCHHHHHHHHHCCEECHHCCCCHHHHCCCCCCCHHHHHHH
CTWQNNPFYQRIIFGTNLGVAAAQIMQSQTVRLYHDHLLVKEPGTQQVTPWHQDQPYYNI
HHCCCCCCEEEEEEECCCHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCCCCEEEC
EGKQNCSFWIPVDPVSRSSTLEFVAGSHLGPWLMPRTFLDNQAKWFPEGSLQELPPIEEA
CCCCCCEEEEECCCCCCCCEEEEECCCCCCCHHCCHHHHCCCCCCCCCCCHHHCCCHHHH
RAKYPIIGWEIEPGDVVCFHMLTLHMARGVEGRYRRRVFSVRFLGDDIKHAPRAWPTSPD
HCCCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHEEEEEECCCHHHHCCCCCCCCCC
FPGLMAEIPAGASMDHPLFPCLPLKI
CCCHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA