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The map label for this gene is yicC [C]

Identifier: 54294909

GI number: 54294909

Start: 2228476

End: 2229342

Strand: Reverse

Name: yicC [C]

Synonym: lpl1988

Alternate gene names: 54294909

Gene position: 2229342-2228476 (Counterclockwise)

Preceding gene: 54294911

Following gene: 54294908

Centisome position: 66.63

GC content: 39.33

Gene sequence:

>867_bases
ATGATTCATAGTATGACGGCTTTTTCTCGAATACAAAAGCAGTTTGATGTAGGTGATTTTTGTTGGGAAATCAGGTCTGT
TAACCATCGCTATCTCGATGTCTCTTTTCGTTTGCCGGAGTCCTTTCGATTTCTTGAAGCAGAATTAAGAACTTTGCTTC
GGGATAAGATACATCGGGGTAAACTGGAGTGCCATCTAAAGTACAAGGATACAAGTTGTGATAATCGGTCTATGCTTATA
AATATAGGTACGATTAATGCATTACTTGATTTAAGCAGTAAATTATCTGCTTCTCATCATCTGGCTAATGATATGACTGT
CAGTCAAGTGCTTTCATGGCCAGGCGTTGTGGAGGCTAGTCTACTGGATATGGAGGAATTGTCTCAAATTGCTTTGGAGT
TATTTCAGAAAAGTATCGATAAATTGTGTGAAGTCAGAGCTGGGGAAGGCAGGTCATTAAAGGCATATGTTGAAGATCGA
TTGCAGGCTTTGCGCCAAGAAGTAATGAAATCCAAAAGCATTGTGGTTTCAATGAGTGCCAAGACTAAAGATAAATTACT
TACGCGTTTGCATGAATTGCAAATGGACGTTCCAGAGGCGCGTGTAGAGCAAGAAATTGCCTTGCTATTAGCCAAACTTG
ATGTGAGTGAAGAGTTGGACAGGTTAGAGACTCATATAGCGGAAGTAAGCCGCACTTTGAATGCAGAAAAGGTGACAGGT
AGAAGACTGGATTTTTTAATGCAAGAATTAAATAGAGAGGCGAATACCCTAAGCTCAAAATCGGATTCAGCAGAGTTAAC
TTTATGTGCTGTTGAAATGAAAGTATTGATTGAGCAGATGCGTGAACAAATTCAGAATTTTGAGTAA

Upstream 100 bases:

>100_bases
CCTGATACAGAAGTTTGTTGCAATTAATTGATGAGCAATCCCTGTGCAATTCTTTTAATTTCAGGTATATTCGCGCAAGG
TTAAAAAGTAGGTATTCTTT

Downstream 100 bases:

>100_bases
ATGATATGGTTAGTGATAATTCAGGAAATTTATACATTGTTGCAGCACCCTCCGGAGGAGGGAAAACAAGTTTGGTGAAA
AAACTCATTGAAATGGTGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MIHSMTAFSRIQKQFDVGDFCWEIRSVNHRYLDVSFRLPESFRFLEAELRTLLRDKIHRGKLECHLKYKDTSCDNRSMLI
NIGTINALLDLSSKLSASHHLANDMTVSQVLSWPGVVEASLLDMEELSQIALELFQKSIDKLCEVRAGEGRSLKAYVEDR
LQALRQEVMKSKSIVVSMSAKTKDKLLTRLHELQMDVPEARVEQEIALLLAKLDVSEELDRLETHIAEVSRTLNAEKVTG
RRLDFLMQELNREANTLSSKSDSAELTLCAVEMKVLIEQMREQIQNFE

Sequences:

>Translated_288_residues
MIHSMTAFSRIQKQFDVGDFCWEIRSVNHRYLDVSFRLPESFRFLEAELRTLLRDKIHRGKLECHLKYKDTSCDNRSMLI
NIGTINALLDLSSKLSASHHLANDMTVSQVLSWPGVVEASLLDMEELSQIALELFQKSIDKLCEVRAGEGRSLKAYVEDR
LQALRQEVMKSKSIVVSMSAKTKDKLLTRLHELQMDVPEARVEQEIALLLAKLDVSEELDRLETHIAEVSRTLNAEKVTG
RRLDFLMQELNREANTLSSKSDSAELTLCAVEMKVLIEQMREQIQNFE
>Mature_288_residues
MIHSMTAFSRIQKQFDVGDFCWEIRSVNHRYLDVSFRLPESFRFLEAELRTLLRDKIHRGKLECHLKYKDTSCDNRSMLI
NIGTINALLDLSSKLSASHHLANDMTVSQVLSWPGVVEASLLDMEELSQIALELFQKSIDKLCEVRAGEGRSLKAYVEDR
LQALRQEVMKSKSIVVSMSAKTKDKLLTRLHELQMDVPEARVEQEIALLLAKLDVSEELDRLETHIAEVSRTLNAEKVTG
RRLDFLMQELNREANTLSSKSDSAELTLCAVEMKVLIEQMREQIQNFE

Specific function: Unknown

COG id: COG1561

COG function: function code S; Uncharacterized stress-induced protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0701 family [H]

Homologues:

Organism=Escherichia coli, GI1790075, Length=288, Percent_Identity=40.625, Blast_Score=222, Evalue=3e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005229
- InterPro:   IPR013551
- InterPro:   IPR013527 [H]

Pfam domain/function: PF08340 DUF1732; PF03755 YicC_N [H]

EC number: NA

Molecular weight: Translated: 33068; Mature: 33068

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHSMTAFSRIQKQFDVGDFCWEIRSVNHRYLDVSFRLPESFRFLEAELRTLLRDKIHRG
CCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCC
KLECHLKYKDTSCDNRSMLINIGTINALLDLSSKLSASHHLANDMTVSQVLSWPGVVEAS
CEEEEEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHH
LLDMEELSQIALELFQKSIDKLCEVRAGEGRSLKAYVEDRLQALRQEVMKSKSIVVSMSA
HHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC
KTKDKLLTRLHELQMDVPEARVEQEIALLLAKLDVSEELDRLETHIAEVSRTLNAEKVTG
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHH
RRLDFLMQELNREANTLSSKSDSAELTLCAVEMKVLIEQMREQIQNFE
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIHSMTAFSRIQKQFDVGDFCWEIRSVNHRYLDVSFRLPESFRFLEAELRTLLRDKIHRG
CCCCHHHHHHHHHHCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCC
KLECHLKYKDTSCDNRSMLINIGTINALLDLSSKLSASHHLANDMTVSQVLSWPGVVEAS
CEEEEEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHH
LLDMEELSQIALELFQKSIDKLCEVRAGEGRSLKAYVEDRLQALRQEVMKSKSIVVSMSA
HHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC
KTKDKLLTRLHELQMDVPEARVEQEIALLLAKLDVSEELDRLETHIAEVSRTLNAEKVTG
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHH
RRLDFLMQELNREANTLSSKSDSAELTLCAVEMKVLIEQMREQIQNFE
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]