Click here to switch to the map view.

The map label for this gene is 54294861

Identifier: 54294861

GI number: 54294861

Start: 2177150

End: 2177392

Strand: Reverse

Name: 54294861

Synonym: lpl1940

Alternate gene names: NA

Gene position: 2177392-2177150 (Counterclockwise)

Preceding gene: 54294862

Following gene: 54294858

Centisome position: 65.08

GC content: 42.39

Gene sequence:

>243_bases
ATGAAAACAGTCCTAATATTAATTATTTTTTTATGTTCTTTTCAAATACAGGCGGCATGCAAATGCAACTGTGACCCGAC
AGACAATAAGATGTGTGCGAGTCAGAATGATCTCGAGCATCCTTGTCCTTCAGTTTGTGCTTCGCCAGCACCTGGTATGG
CGCCTTCGTTTACAGCATGCCCTGTATCAAGGGTTACTGATCCAGTTACAGGAGTTACCAGATGGGTCAATATGTGTAAC
TAA

Upstream 100 bases:

>100_bases
TTATTGCAGCCTCATTAATGTGCTAAAATTGTACACATGGGTAAACTGATATCATTGCTTGAATGCTAAATTACATTCCC
TTATTGAAAAGGATTTCCAT

Downstream 100 bases:

>100_bases
TATCAAATAATCCATTATTTTCAGGAAAAATTTTATCTTTAATTTACCTGACTGATTAGATGTTGGTTATCACTTTCAGG
CTTTTAATGTGGGGTAAGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 80; Mature: 80

Protein sequence:

>80_residues
MKTVLILIIFLCSFQIQAACKCNCDPTDNKMCASQNDLEHPCPSVCASPAPGMAPSFTACPVSRVTDPVTGVTRWVNMCN

Sequences:

>Translated_80_residues
MKTVLILIIFLCSFQIQAACKCNCDPTDNKMCASQNDLEHPCPSVCASPAPGMAPSFTACPVSRVTDPVTGVTRWVNMCN
>Mature_80_residues
MKTVLILIIFLCSFQIQAACKCNCDPTDNKMCASQNDLEHPCPSVCASPAPGMAPSFTACPVSRVTDPVTGVTRWVNMCN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8594; Mature: 8594

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

11.2 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
16.2 %Cys+Met (Translated Protein)
11.2 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
16.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTVLILIIFLCSFQIQAACKCNCDPTDNKMCASQNDLEHPCPSVCASPAPGMAPSFTAC
CHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC
PVSRVTDPVTGVTRWVNMCN
CHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKTVLILIIFLCSFQIQAACKCNCDPTDNKMCASQNDLEHPCPSVCASPAPGMAPSFTAC
CHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC
PVSRVTDPVTGVTRWVNMCN
CHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA