Click here to switch to the map view.

The map label for this gene is ygaD [C]

Identifier: 54294690

GI number: 54294690

Start: 1971255

End: 1971749

Strand: Reverse

Name: ygaD [C]

Synonym: lpl1767

Alternate gene names: 54294690

Gene position: 1971749-1971255 (Counterclockwise)

Preceding gene: 54294691

Following gene: 54294689

Centisome position: 58.93

GC content: 40.2

Gene sequence:

>495_bases
ATGGGTCATTTCTCGATACTGATTGAAGAAATAGCAGCCTATCTAAAAAAGGCCAAATGGCAATTAGTGACCGCGGAATC
TTGTACGGGAGGTTTAATTGCTACTTGCCTTACAGAAATACCCGGAAGCTCAAATTGGTTTGAGCGTGGTTTTGTTACTT
ATAGTAATTTAGCTAAAGAAGAAATGCTTTCTGTTGCTCACGAGCTAATACAAACCCATGGGGCAGTCAGTGAAGAAGTC
GCATTGGCTATGGCTGTTGGTGCGTTACAACATAGTATGGGTAATATTGCTGTATCAGTTACTGGTATCGCAGGTCCAGA
AGGAGGCAGTATTGAAAAACCAGTAGGTACTGTATGCTTTGCCTGGGCAGTTCGTCATCAATTTCAACAAACATCAAGAC
AGCAATTCACTGGAAGTCGGCAAAAAATACGTTTGTCTGCCTGTCAATATGCTTTAAATGGAGTGCTTTCTATTCTTAAA
AAAATTAGTAGTTAA

Upstream 100 bases:

>100_bases
ACTGAAGGCCAAGGTCAATAAGATTAATTTCAGTGTTATTTATTTAAATTATCAAGAAAACCCCATAGATGTTTTATGGG
GTTTTTTATAGGTGAAAGGT

Downstream 100 bases:

>100_bases
CCGAATAGTTTTTTAAAAATATAGATTAACTATTATTTGGTCTCTAATTCTTGTTTTTACCATTCAGCCAATAAAAATTA
CAATAAATCTCTTGCATAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MGHFSILIEEIAAYLKKAKWQLVTAESCTGGLIATCLTEIPGSSNWFERGFVTYSNLAKEEMLSVAHELIQTHGAVSEEV
ALAMAVGALQHSMGNIAVSVTGIAGPEGGSIEKPVGTVCFAWAVRHQFQQTSRQQFTGSRQKIRLSACQYALNGVLSILK
KISS

Sequences:

>Translated_164_residues
MGHFSILIEEIAAYLKKAKWQLVTAESCTGGLIATCLTEIPGSSNWFERGFVTYSNLAKEEMLSVAHELIQTHGAVSEEV
ALAMAVGALQHSMGNIAVSVTGIAGPEGGSIEKPVGTVCFAWAVRHQFQQTSRQQFTGSRQKIRLSACQYALNGVLSILK
KISS
>Mature_163_residues
GHFSILIEEIAAYLKKAKWQLVTAESCTGGLIATCLTEIPGSSNWFERGFVTYSNLAKEEMLSVAHELIQTHGAVSEEVA
LAMAVGALQHSMGNIAVSVTGIAGPEGGSIEKPVGTVCFAWAVRHQFQQTSRQQFTGSRQKIRLSACQYALNGVLSILKK
ISS

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=147, Percent_Identity=52.3809523809524, Blast_Score=149, Evalue=7e-38,
Organism=Escherichia coli, GI1787818, Length=130, Percent_Identity=37.6923076923077, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 17628; Mature: 17497

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGHFSILIEEIAAYLKKAKWQLVTAESCTGGLIATCLTEIPGSSNWFERGFVTYSNLAKE
CCHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHH
EMLSVAHELIQTHGAVSEEVALAMAVGALQHSMGNIAVSVTGIAGPEGGSIEKPVGTVCF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHH
AWAVRHQFQQTSRQQFTGSRQKIRLSACQYALNGVLSILKKISS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GHFSILIEEIAAYLKKAKWQLVTAESCTGGLIATCLTEIPGSSNWFERGFVTYSNLAKE
CHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHH
EMLSVAHELIQTHGAVSEEVALAMAVGALQHSMGNIAVSVTGIAGPEGGSIEKPVGTVCF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHH
AWAVRHQFQQTSRQQFTGSRQKIRLSACQYALNGVLSILKKISS
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA