Click here to switch to the map view.

The map label for this gene is rarA [H]

Identifier: 54294651

GI number: 54294651

Start: 1930286

End: 1931590

Strand: Reverse

Name: rarA [H]

Synonym: lpl1728

Alternate gene names: 54294651

Gene position: 1931590-1930286 (Counterclockwise)

Preceding gene: 54294652

Following gene: 54294650

Centisome position: 57.73

GC content: 39.62

Gene sequence:

>1305_bases
ATGAGCCTATTCAATAAAGAACCTGATCCACCATTGGCTGAAAGTTTAAGGCCTCAGCATATCAATGAAGTTATAGGTCA
AAGTCATTTGCTTGGAGAGGGTAAACCCCTAAGACTTTGTTTTATGGGCTCCAAATTGCATTCTATGATTTTATGGGGGC
CACCAGGGGTCGGTAAGACTACTATAGCAAGATTAACCGCACAGGCTTTTGATTGTGAATGGATAGCATTATCAGCTGTG
TTTTCGGGTGTTAAGGATATTCGAGCTGCGATTGAGAAAGCGCAGGAATATTTAATTCATGATAAACAGACTATCTTGTT
TATTGATGAAATTCATAGATTTAATAAAGCCCAGCAAGATGCCTTATTACCTTATACAGAATCAGGTTTAATTACTTTCA
TTGGGGCAACTACAGAAAATCCGTCTTTTGAGGTTAATCCAGCGTTATTATCACGGGCGCAAGTTTATGTTTTAAAACTG
TTATCGGAGCAGGAGTTAAAACTCTTATTTCTTAGGGCTAAGCAAAGAGCTTTGTCTTCTCTGCAATTTACCGAGGAAGC
CATGGATTTTTTAATTTCTTGTGCTGATGGAGATGCCAGACGATTACTCAATTTACTTGAGCAAACAAAAACAGCCTGCC
TAACAATTAAAACAGCAGTTGTTGATGTAGAGCTTTTGCATAATGTGATAGTACAAAGTGGTCGACGTTTTGATAAAGGT
GGAGAAGCGTTTTACGATCAGATTTCTGCTTTACATAAGTCGGTACGAGGCTCTAATCCTGATGCGGCATTATATTGGCT
ATGTCGAATGCTGGATGGTGGTGTGGATCCATATTATTTAGCTAGGCGTATTATTAGAATGTCATGGGAAGACATTGGGT
TAGCAGATCCGAAAGCAATTCAAATCGCTAATGATGCTGCTGCAACTTATGAGAGGCTTGGCTCACCCGAGGGCGAGCTT
GCTTTGGCACAAGCTGTAATTTATTTGTCTGTTGCTGCCAAGAGCAATGCGGGATATGTCGCATTTAATCAAGCTATGGA
ATTTATAAAAAGAGACAAGTCCAGAGAAGTGCCTATTCACTTGAGAAACGCTCCTACTCAATTAATGAAAAAACTAGGTT
ATGGTCATGAATATCGATATGCTCATGATGAACCACACGGCTATGCGGCTGGTGAATGTTATTTACCTGAAGGAATGCCA
GAAGTAAATTGGTATAACCCCGTGCAAAGAGGTTTAGAAACTAAAATTGCAGAAAAGCTCGCTTTTCTGCGCCAATTAGA
TAAAGAGGTGAAAAAGAAAGTTTGA

Upstream 100 bases:

>100_bases
AGTGCAGATTAAGTCAAATCCTAAATTACCTGCCAAATTGTTCCAATTCAACCCCCCTAAAGGTGTGGATGTGGTAAAAC
AATAATTTTAATGTTGATTT

Downstream 100 bases:

>100_bases
TTTGTTCTCTGTTTAAGCCAGGTTAAGTTTGTCTCCCAATTTATCCTCAAGAAGAAGTCCAATCGACATTGGTATCCGGT
GAATTATAAAGAGCATGTCA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MSLFNKEPDPPLAESLRPQHINEVIGQSHLLGEGKPLRLCFMGSKLHSMILWGPPGVGKTTIARLTAQAFDCEWIALSAV
FSGVKDIRAAIEKAQEYLIHDKQTILFIDEIHRFNKAQQDALLPYTESGLITFIGATTENPSFEVNPALLSRAQVYVLKL
LSEQELKLLFLRAKQRALSSLQFTEEAMDFLISCADGDARRLLNLLEQTKTACLTIKTAVVDVELLHNVIVQSGRRFDKG
GEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGVDPYYLARRIIRMSWEDIGLADPKAIQIANDAAATYERLGSPEGEL
ALAQAVIYLSVAAKSNAGYVAFNQAMEFIKRDKSREVPIHLRNAPTQLMKKLGYGHEYRYAHDEPHGYAAGECYLPEGMP
EVNWYNPVQRGLETKIAEKLAFLRQLDKEVKKKV

Sequences:

>Translated_434_residues
MSLFNKEPDPPLAESLRPQHINEVIGQSHLLGEGKPLRLCFMGSKLHSMILWGPPGVGKTTIARLTAQAFDCEWIALSAV
FSGVKDIRAAIEKAQEYLIHDKQTILFIDEIHRFNKAQQDALLPYTESGLITFIGATTENPSFEVNPALLSRAQVYVLKL
LSEQELKLLFLRAKQRALSSLQFTEEAMDFLISCADGDARRLLNLLEQTKTACLTIKTAVVDVELLHNVIVQSGRRFDKG
GEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGVDPYYLARRIIRMSWEDIGLADPKAIQIANDAAATYERLGSPEGEL
ALAQAVIYLSVAAKSNAGYVAFNQAMEFIKRDKSREVPIHLRNAPTQLMKKLGYGHEYRYAHDEPHGYAAGECYLPEGMP
EVNWYNPVQRGLETKIAEKLAFLRQLDKEVKKKV
>Mature_433_residues
SLFNKEPDPPLAESLRPQHINEVIGQSHLLGEGKPLRLCFMGSKLHSMILWGPPGVGKTTIARLTAQAFDCEWIALSAVF
SGVKDIRAAIEKAQEYLIHDKQTILFIDEIHRFNKAQQDALLPYTESGLITFIGATTENPSFEVNPALLSRAQVYVLKLL
SEQELKLLFLRAKQRALSSLQFTEEAMDFLISCADGDARRLLNLLEQTKTACLTIKTAVVDVELLHNVIVQSGRRFDKGG
EAFYDQISALHKSVRGSNPDAALYWLCRMLDGGVDPYYLARRIIRMSWEDIGLADPKAIQIANDAAATYERLGSPEGELA
LAQAVIYLSVAAKSNAGYVAFNQAMEFIKRDKSREVPIHLRNAPTQLMKKLGYGHEYRYAHDEPHGYAAGECYLPEGMPE
VNWYNPVQRGLETKIAEKLAFLRQLDKEVKKKV

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=439, Percent_Identity=41.2300683371298, Blast_Score=296, Evalue=4e-80,
Organism=Homo sapiens, GI18426904, Length=439, Percent_Identity=37.3576309794989, Blast_Score=244, Evalue=9e-65,
Organism=Escherichia coli, GI1787119, Length=425, Percent_Identity=50.5882352941176, Blast_Score=421, Evalue=1e-119,
Organism=Saccharomyces cerevisiae, GI6324111, Length=426, Percent_Identity=38.9671361502347, Blast_Score=280, Evalue=4e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48635; Mature: 48503

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFNKEPDPPLAESLRPQHINEVIGQSHLLGEGKPLRLCFMGSKLHSMILWGPPGVGKT
CCCCCCCCCCCHHHCCCHHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCHH
TIARLTAQAFDCEWIALSAVFSGVKDIRAAIEKAQEYLIHDKQTILFIDEIHRFNKAQQD
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCHHHHC
ALLPYTESGLITFIGATTENPSFEVNPALLSRAQVYVLKLLSEQELKLLFLRAKQRALSS
CCCCCCCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
LQFTEEAMDFLISCADGDARRLLNLLEQTKTACLTIKTAVVDVELLHNVIVQSGRRFDKG
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHCCCCCCCC
GEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGVDPYYLARRIIRMSWEDIGLADPKAI
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEE
QIANDAAATYERLGSPEGELALAQAVIYLSVAAKSNAGYVAFNQAMEFIKRDKSREVPIH
EECCHHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCCCEEEHHHHHHHHHCCCCCCCCEE
LRNAPTQLMKKLGYGHEYRYAHDEPHGYAAGECYLPEGMPEVNWYNPVQRGLETKIAEKL
ECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
AFLRQLDKEVKKKV
HHHHHHHHHHHHCC
>Mature Secondary Structure 
SLFNKEPDPPLAESLRPQHINEVIGQSHLLGEGKPLRLCFMGSKLHSMILWGPPGVGKT
CCCCCCCCCCHHHCCCHHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCHH
TIARLTAQAFDCEWIALSAVFSGVKDIRAAIEKAQEYLIHDKQTILFIDEIHRFNKAQQD
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCHHHHC
ALLPYTESGLITFIGATTENPSFEVNPALLSRAQVYVLKLLSEQELKLLFLRAKQRALSS
CCCCCCCCCEEEEEECCCCCCCEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
LQFTEEAMDFLISCADGDARRLLNLLEQTKTACLTIKTAVVDVELLHNVIVQSGRRFDKG
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHCCCCCCCC
GEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGVDPYYLARRIIRMSWEDIGLADPKAI
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEE
QIANDAAATYERLGSPEGELALAQAVIYLSVAAKSNAGYVAFNQAMEFIKRDKSREVPIH
EECCHHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCCCEEEHHHHHHHHHCCCCCCCCEE
LRNAPTQLMKKLGYGHEYRYAHDEPHGYAAGECYLPEGMPEVNWYNPVQRGLETKIAEKL
ECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHH
AFLRQLDKEVKKKV
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]