| Definition | Legionella pneumophila str. Lens, complete genome. |
|---|---|
| Accession | NC_006369 |
| Length | 3,345,687 |
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The map label for this gene is lspD [H]
Identifier: 54294209
GI number: 54294209
Start: 1418393
End: 1420768
Strand: Reverse
Name: lspD [H]
Synonym: lpl1274
Alternate gene names: 54294209
Gene position: 1420768-1418393 (Counterclockwise)
Preceding gene: 54294211
Following gene: 54294208
Centisome position: 42.47
GC content: 39.81
Gene sequence:
>2376_bases ATGCGCTCGATAGTAATTATACTTTTAGCCTTCGTTTGTTGTTCATTAGTACGTGCTAATGATGTCAATATTTCAACCGT AACCAAAGATGGCAATACATTTTTTTATCTTCAAGCTGGCGCCTATAATCTCGAAAAAGACGCTAAAATACGTCAAAATG AACTTGCCAAATTAGTCGATCAAAAAGTTGAAATTAAAAACCTGGCTGACAAACATCTTTACCTTGTGCAGATTGGTCCA ATTGATGATTACCCAACTGCAAGAGCACTCAAAGAAAAATTATCTCAAAAAACAGAAAGGCAGTTTAATCAAATTAACAA AAACCAAACCTCTTCACTTGAGGTAAGCCAATTGCCTAAAAATATGGAACAAGCGCAAACAGCTCCTCCAGGTAGTAAAT TATGGAATTTACGTAACGCTGATATTAGAGCCGTAATCGCAGAAGTCTCTCGAATTACAGGTAAAAATTTTGTTATTGAT CCCAGAGTACAAGGAAAAGTATCGATTGTTTCATCAACGCCGTTATCCAGCCGCGAGCTATATCAAGTCTTTCTCTCAGT ACTGCAGGTATCAGGTTATGCCGCAATACCTAACGGAGAAATTATCAAAATTATTCCCAATATTGATGCAAAAACACAGT CACCTGATTTACTCAGTGGAATGAAGAGTCCTCCACGAGGTGACGATATGATGGTCGCCGTAATACCCGTTCATTATGTT CCTTCTGAACAGCTGGTACCTGTTCTAAGGCCACTAATGCCCCAATGGAGCAGCGTATCTGCCTATGCTCCTTCTAATAT GTTGATCCTGTCTGGTCGAGCAAACAATATTAAAAGCCTTGCGGAAATTATCAAACAAGTAGATAGCTCAAGTGCAAACG GCATAGACATGGTTCGTTTACATCATGCTTTGGCTATGGATGTTGCAAACACTTTAAAAGACCTGGTTAAAACTCAACCT GGTATCGGCAGCAGAACACAAATTACCATTGCTGCAGATGACCGTTCCAACTCAATTTTAGTCAGTGGGAGCAAGACTGA TAGAATTCGTTTGCGAATGCTTATATTGAAACTGGATAAAGACAGTTCAACAGGAGTCAATTCAAATACACAAGTTGTTT ACCTGAATTACTTAAGAGCCGAAGATTTAGTCCCCATACTGGCAGGTATAGCCCAAGCCAATTTCAGTGGAAATGTAGGA ACAACCATTGGAACCATTACAAGACCCGCATTAGACAGCACCAACCCTGCTTCCAGTCTTGCCAATACATCTGCCGATGG ACAAAGCTCTTCATTAAGCTCAACTTCGACCAGTTCCGCCCCTATGAATGCGTCAGGAGCAACAGCAAATACAACATCAG CAAGTACTCAAAATGAAGGCTCTACCAAGCCTACTGTACAGATAATAGGAGAACCGAACACTAACTCTATTATTCTTAAT GCACCTGCTTCAATTATTCGCACTCTAAAAACAGTCATTTCTCAGCTAGATATAAAACCAGCTCAACTATTAATTGAGGC CCTCGTTGCTGAAGTGGATGAAAAGGACGTTAACAATCTGGGAATAGAGTGGGGTTCAAATCAACAAACAGGCAATCCCA AGGATTTCAGACCAGGCTTTGCCATTATAAACAGTAAAACCAGGATTGACGATTTCCAGGCTCAAATTTATGCCTTGGCA AGAGAGCAAAGAGCAAATATTTTATCAACTCCCTCCGTAGTAGTCCTTGATAATCGTCAAGCAAAAATACTCATAGGTAA ACAGGTCTCAATAGCAACAACCAGCTACCCCAATAATGCAGGAGGCACTACCACAGCAAGTCCTTTCACAACATTTGACA GGGTTAACGTTGCTTTGCACCTTTATGTAAGGCCACAAATTACTCGCGGACAAGGAATTCAACTACAGATTGATCAAGGG AATGATACTTTGGATCCAGCGACTTCTACAACAGACAACACAACAACCCCCACTTTTAATATCAGCAGTATTGTAACTTC AGTTCATGTAGAAAGTGGTGATGTTGTAGTACTTGGAGGATTAATTCAGGACAGTATTGGAAATGACAATAATAAATTAC CCATTTTAGGAGATATACCTGGAATAGGCAGATTGTTCCAACGTAACATTCGCAATAGAGACAAGCGAGTGCTTATGGTA TTTATTAAACCTATCATATTACGCAACGAAAGAGATAACTTGCATGTCACTGGCGAAAAATACAATTATGTCCGCCAATA TCAGCTGGATTGGATTCGATCTCAAGAAGCTTTTGAACAAACAGATGATGAAACAGTATTGCCCCCATTAACTCAAGGTA ATCTACCAGTACCTTTTAGTACTCCTCCCCAATACTCATCAAAAATGACCAAATAA
Upstream 100 bases:
>100_bases TAAAAACCACTTAAATTTCCTGCTCTAAGTTATTAAAAAAGCTATGGTAAGCAGTCAAATTTAGTTATTATGTCTTTATC CATTATTTTACGGTTTTTAA
Downstream 100 bases:
>100_bases ATCATGGAAAATGAAGAAAAGTCACTTAAAATTCCTTACAGTTTTGCCAAAGGCAATGGACTTGTTGTGGGAGAAATAAA AGAAAATCTGGCTATTGTCT
Product: type II protein secretion LspD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 791; Mature: 791
Protein sequence:
>791_residues MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNLEKDAKIRQNELAKLVDQKVEIKNLADKHLYLVQIGP IDDYPTARALKEKLSQKTERQFNQINKNQTSSLEVSQLPKNMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVID PRVQGKVSIVSSTPLSSRELYQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLLSGMKSPPRGDDMMVAVIPVHYV PSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANNIKSLAEIIKQVDSSSANGIDMVRLHHALAMDVANTLKDLVKTQP GIGSRTQITIAADDRSNSILVSGSKTDRIRLRMLILKLDKDSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQANFSGNVG TTIGTITRPALDSTNPASSLANTSADGQSSSLSSTSTSSAPMNASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILN APASIIRTLKTVISQLDIKPAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGFAIINSKTRIDDFQAQIYALA REQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQG NDTLDPATSTTDNTTTPTFNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMV FIKPIILRNERDNLHVTGEKYNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFSTPPQYSSKMTK
Sequences:
>Translated_791_residues MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNLEKDAKIRQNELAKLVDQKVEIKNLADKHLYLVQIGP IDDYPTARALKEKLSQKTERQFNQINKNQTSSLEVSQLPKNMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVID PRVQGKVSIVSSTPLSSRELYQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLLSGMKSPPRGDDMMVAVIPVHYV PSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANNIKSLAEIIKQVDSSSANGIDMVRLHHALAMDVANTLKDLVKTQP GIGSRTQITIAADDRSNSILVSGSKTDRIRLRMLILKLDKDSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQANFSGNVG TTIGTITRPALDSTNPASSLANTSADGQSSSLSSTSTSSAPMNASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILN APASIIRTLKTVISQLDIKPAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGFAIINSKTRIDDFQAQIYALA REQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQG NDTLDPATSTTDNTTTPTFNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMV FIKPIILRNERDNLHVTGEKYNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFSTPPQYSSKMTK >Mature_791_residues MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNLEKDAKIRQNELAKLVDQKVEIKNLADKHLYLVQIGP IDDYPTARALKEKLSQKTERQFNQINKNQTSSLEVSQLPKNMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVID PRVQGKVSIVSSTPLSSRELYQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLLSGMKSPPRGDDMMVAVIPVHYV PSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANNIKSLAEIIKQVDSSSANGIDMVRLHHALAMDVANTLKDLVKTQP GIGSRTQITIAADDRSNSILVSGSKTDRIRLRMLILKLDKDSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQANFSGNVG TTIGTITRPALDSTNPASSLANTSADGQSSSLSSTSTSSAPMNASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILN APASIIRTLKTVISQLDIKPAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGFAIINSKTRIDDFQAQIYALA REQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQG NDTLDPATSTTDNTTTPTFNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMV FIKPIILRNERDNLHVTGEKYNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFSTPPQYSSKMTK
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG1450
COG function: function code NU; Type II secretory pathway, component PulD
Gene ontology:
Cell location: Cell outer membrane (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GSP D family [H]
Homologues:
Organism=Escherichia coli, GI87082242, Length=654, Percent_Identity=31.9571865443425, Blast_Score=295, Evalue=5e-81, Organism=Escherichia coli, GI1789793, Length=273, Percent_Identity=23.4432234432234, Blast_Score=80, Evalue=5e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001775 - InterPro: IPR005644 - InterPro: IPR004846 - InterPro: IPR013356 - InterPro: IPR004845 [H]
Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]
EC number: NA
Molecular weight: Translated: 86115; Mature: 86115
Theoretical pI: Translated: 9.29; Mature: 9.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNLEKDAKIRQNELAKLVD CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHH QKVEIKNLADKHLYLVQIGPIDDYPTARALKEKLSQKTERQFNQINKNQTSSLEVSQLPK HHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHCC NMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVIDPRVQGKVSIVSSTPLSSREL HHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCCCCHHHH YQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLLSGMKSPPRGDDMMVAVIPVHYV HHHHHHHHHHCCEEECCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEEC PSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANNIKSLAEIIKQVDSSSANGIDMVRL CCHHHHHHHHHHCCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHH HHALAMDVANTLKDLVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRMLILKLDK HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECC DSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSL CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHH ANTSADGQSSSLSSTSTSSAPMNASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILN HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE APASIIRTLKTVISQLDIKPAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGF CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCE AIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNA EEECCCCCCHHHHHHHHHHHHHHHCCEECCCCEEEECCCCEEEEEECEEEEEEECCCCCC GGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATSTTDNTTTPTFN CCCCCCCCCCEEEEEEEEEEEEEECEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEE ISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMV HHHHEEEEEECCCCEEEECCHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEE FIKPIILRNERDNLHVTGEKYNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFS EECHHHEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC TPPQYSSKMTK CCCCHHHCCCC >Mature Secondary Structure MRSIVIILLAFVCCSLVRANDVNISTVTKDGNTFFYLQAGAYNLEKDAKIRQNELAKLVD CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHH QKVEIKNLADKHLYLVQIGPIDDYPTARALKEKLSQKTERQFNQINKNQTSSLEVSQLPK HHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHCC NMEQAQTAPPGSKLWNLRNADIRAVIAEVSRITGKNFVIDPRVQGKVSIVSSTPLSSREL HHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCEEEEEECCCCCHHHH YQVFLSVLQVSGYAAIPNGEIIKIIPNIDAKTQSPDLLSGMKSPPRGDDMMVAVIPVHYV HHHHHHHHHHCCEEECCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCCEEEEEEEEEEC PSEQLVPVLRPLMPQWSSVSAYAPSNMLILSGRANNIKSLAEIIKQVDSSSANGIDMVRL CCHHHHHHHHHHCCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHH HHALAMDVANTLKDLVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRMLILKLDK HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEEEEEECC DSSTGVNSNTQVVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSL CCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCHHHH ANTSADGQSSSLSSTSTSSAPMNASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILN HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEE APASIIRTLKTVISQLDIKPAQLLIEALVAEVDEKDVNNLGIEWGSNQQTGNPKDFRPGF CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCE AIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPNNA EEECCCCCCHHHHHHHHHHHHHHHCCEECCCCEEEECCCCEEEEEECEEEEEEECCCCCC GGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATSTTDNTTTPTFN CCCCCCCCCCEEEEEEEEEEEEEECEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEE ISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVLMV HHHHEEEEEECCCCEEEECCHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEE FIKPIILRNERDNLHVTGEKYNYVRQYQLDWIRSQEAFEQTDDETVLPPLTQGNLPVPFS EECHHHEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC TPPQYSSKMTK CCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]