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The map label for this gene is rdgC [H]

Identifier: 54294131

GI number: 54294131

Start: 1336885

End: 1337823

Strand: Reverse

Name: rdgC [H]

Synonym: lpl1195

Alternate gene names: 54294131

Gene position: 1337823-1336885 (Counterclockwise)

Preceding gene: 54294132

Following gene: 54294121

Centisome position: 39.99

GC content: 39.72

Gene sequence:

>939_bases
ATGTGGTTCAATAATGCACTGATGTTTCAATACAAACTAGACGGTGAATGTGATTTAAACCGTTCTTTGACTGAAGAAGC
GCTTAAGCCCTGCCCCCCCCATGCTCGCTTTACTTATGGCTGGCTTCCTGCGTTTGAGCAGGAAATAGTACATGAAGTAG
CTGGCAGCACGCTTATTTGCCTGGGTAAAGAAGAGCGAATCCTCCCTAGAGGAGTCATTAATAAAATGCTCAAGGAAAAA
ATTCAGCAAATAGAAGCAGCCCAGGGTCGACCGGTAAAACGCGCAGAAAAGGCTCAAATGGCTGAGGATCTTGAATTTGA
ACTATTGCCTAAGTCCTTCTGTGTTCAAAAAAAACTTTTAGCGATTCTTGATAGTGTCAGTCAGAGATTAATTATTAATA
CTTCAAGCAACAATCAGGCGTCTCAGTTGACTTCTTTTTTGCGTAAATCAATCCCTGGTATTGTGATAGAACCATTAAAC
CTTACCGAAAATCTTGCCTTGCGATTCGCAGAATGGATCCATTCCCCAGCAACTCTCCCTGATGACTTTCAATTAGCCTC
CGATTGTTTACTCTTTTCTCTTGAAGATGAAAAAAAACGAGTCCATTGCAAAGGCTACGAATTACCTGCCGAAGAAATCC
TGACTCTATTGGCTCAAGGTATGGGGACTGCAGAAATCTCATTAATTTGGAAAGAGCGAATTCAGTTCACCTTGACGCAG
GATTTTACTTTTAAAAAACTGAAAAGCCTTGATTATCTGATCGATGATTTTAATGAGATCAGACAATTGGAAGAAGAGTA
TCAAAGACAAGATGCCGCGTTGACCTTATTAAGTGGGGAGTTAAGAGAACTTATCAACGGATTAATGAAGATATTTGTTA
ATCATGCAGAAATGAAATCAGCTCAAATTGAAAAAGTTGCAGAAGATTGCACAATATAA

Upstream 100 bases:

>100_bases
TTGACAGTTTGCTCTCTTGCGTCGAAATGACAACAGACCCTAATCATCGCAGTAAAATGCTATCCGTGATAACATCCCAA
ATTTATTTTAAGGACTGATT

Downstream 100 bases:

>100_bases
AGTCGTATCATTTTAACCTGTAACCTATCGAGGGAGCTCCTTTGCTACCAGAGCTCCCTCTCATCTTGACTCAAGAGAAA
ACGAGTGGATTGCACATCAC

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MWFNNALMFQYKLDGECDLNRSLTEEALKPCPPHARFTYGWLPAFEQEIVHEVAGSTLICLGKEERILPRGVINKMLKEK
IQQIEAAQGRPVKRAEKAQMAEDLEFELLPKSFCVQKKLLAILDSVSQRLIINTSSNNQASQLTSFLRKSIPGIVIEPLN
LTENLALRFAEWIHSPATLPDDFQLASDCLLFSLEDEKKRVHCKGYELPAEEILTLLAQGMGTAEISLIWKERIQFTLTQ
DFTFKKLKSLDYLIDDFNEIRQLEEEYQRQDAALTLLSGELRELINGLMKIFVNHAEMKSAQIEKVAEDCTI

Sequences:

>Translated_312_residues
MWFNNALMFQYKLDGECDLNRSLTEEALKPCPPHARFTYGWLPAFEQEIVHEVAGSTLICLGKEERILPRGVINKMLKEK
IQQIEAAQGRPVKRAEKAQMAEDLEFELLPKSFCVQKKLLAILDSVSQRLIINTSSNNQASQLTSFLRKSIPGIVIEPLN
LTENLALRFAEWIHSPATLPDDFQLASDCLLFSLEDEKKRVHCKGYELPAEEILTLLAQGMGTAEISLIWKERIQFTLTQ
DFTFKKLKSLDYLIDDFNEIRQLEEEYQRQDAALTLLSGELRELINGLMKIFVNHAEMKSAQIEKVAEDCTI
>Mature_312_residues
MWFNNALMFQYKLDGECDLNRSLTEEALKPCPPHARFTYGWLPAFEQEIVHEVAGSTLICLGKEERILPRGVINKMLKEK
IQQIEAAQGRPVKRAEKAQMAEDLEFELLPKSFCVQKKLLAILDSVSQRLIINTSSNNQASQLTSFLRKSIPGIVIEPLN
LTENLALRFAEWIHSPATLPDDFQLASDCLLFSLEDEKKRVHCKGYELPAEEILTLLAQGMGTAEISLIWKERIQFTLTQ
DFTFKKLKSLDYLIDDFNEIRQLEEEYQRQDAALTLLSGELRELINGLMKIFVNHAEMKSAQIEKVAEDCTI

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=305, Percent_Identity=30.4918032786885, Blast_Score=147, Evalue=8e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 35692; Mature: 35692

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFNNALMFQYKLDGECDLNRSLTEEALKPCPPHARFTYGWLPAFEQEIVHEVAGSTLIC
CCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHCCCEEEE
LGKEERILPRGVINKMLKEKIQQIEAAQGRPVKRAEKAQMAEDLEFELLPKSFCVQKKLL
ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHCCCHHHHHHHHHH
AILDSVSQRLIINTSSNNQASQLTSFLRKSIPGIVIEPLNLTENLALRFAEWIHSPATLP
HHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCC
DDFQLASDCLLFSLEDEKKRVHCKGYELPAEEILTLLAQGMGTAEISLIWKERIQFTLTQ
CHHHHHHHHHEEEECCCCCEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEC
DFTFKKLKSLDYLIDDFNEIRQLEEEYQRQDAALTLLSGELRELINGLMKIFVNHAEMKS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQIEKVAEDCTI
HHHHHHHHHCCC
>Mature Secondary Structure
MWFNNALMFQYKLDGECDLNRSLTEEALKPCPPHARFTYGWLPAFEQEIVHEVAGSTLIC
CCCCCEEEEEEEECCCCCCCHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHCCCEEEE
LGKEERILPRGVINKMLKEKIQQIEAAQGRPVKRAEKAQMAEDLEFELLPKSFCVQKKLL
ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHCCCHHHHHHHHHH
AILDSVSQRLIINTSSNNQASQLTSFLRKSIPGIVIEPLNLTENLALRFAEWIHSPATLP
HHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCCC
DDFQLASDCLLFSLEDEKKRVHCKGYELPAEEILTLLAQGMGTAEISLIWKERIQFTLTQ
CHHHHHHHHHEEEECCCCCEEEECCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEC
DFTFKKLKSLDYLIDDFNEIRQLEEEYQRQDAALTLLSGELRELINGLMKIFVNHAEMKS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQIEKVAEDCTI
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA