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The map label for this gene is yfgC [H]

Identifier: 54294121

GI number: 54294121

Start: 1323601

End: 1325037

Strand: Reverse

Name: yfgC [H]

Synonym: lpl1185

Alternate gene names: 54294121

Gene position: 1325037-1323601 (Counterclockwise)

Preceding gene: 54294131

Following gene: 54294120

Centisome position: 39.6

GC content: 38.27

Gene sequence:

>1437_bases
ATGATTAAATTGAACTTAAATTATAAGTTAATCACGAAAAAGACATTACCTAAACTATTTTACTGGGGTTTGGGGATCGT
CTTCTTTTTTTTAGCACCTACAACTAATGCCGGGAGTCTTTCACCCTATACAACCAAAGAACTGGAACAATTAGAAAGAG
AATTTATTCAACTTATTAATCAGTCGGACAGCGTAGAGCGCAATCCTTTGGCCAGTCAATACATCAACTCCATAGGAAAA
AAACTGGCACATTATGGCCGTATCAAAACACCTTATTTTTTTATTGTTAAATCCAAAGAAATCAATGCATTTGCAGGTCC
AGGAGGGTACATAGGCATTAATACCCAACTCATTTTAACGAGCAGCAATGAAAGTGAACTGGCAGCTGTAATGGCTCATG
AAATTGCGCATGTTCGCCTACATCATCTTTACAGCATTATAGAACACCAAAAACAGATGCGTGTTCCATTATTAGCCTCT
ATTCTGGCGTCTGCAGCCTTGGGCGTCTTGAATCCAACTGTCGGGATGGGTGCTATGATGGCATCCGTTTCCGGATTTTC
CCAGGACAACATCAATTTTACACGCTCAAAAGAAAAAGAAGCCGACAGAATTGGTATAGACATGCTGATTAAGGCAGGCT
TCAATCCTCAAGGTATGGCTGCATTTTTTAATAAAATGCAAGAAAATTCCCGTTATTATTACACTGCCAATATTCCAGCA
ATACTGCGGACTCACCCCCTGGATGCTGACAGGATAGCTGAGGCTGAAAACAGAACCAGCCGTTTGCCTAAAAAAAATTA
TACTGATTCTTTGGACTATGCCTTATTTAAAGAGTTAATCAGAGTTTCTGTCGCCTCTAATAATAAACAAATTCTTGATT
ATTATGAGCATCATTGCCATAAAAAAAATCCTGCCACTGCTTGTCAGTATGGATACGTACTTGCCTTGTTAAATAATAAC
AATTTTCAAAAAGCAGCTGAAAAATTAAACCCTTTACTGTTACAGGATAATAGTAATCTCAATTTTCAAATTGCTATGGC
TCAGGCTGAATTAGGTTTATCACAATATCAATCAGCACTCTCCCGTCTTGCTGAATTACAAAATAATTTTCCTGACAATT
ATGCTGCTCTAATGGCATACGCCCAAGGATTGTTAACCGCAAATCAACCTCAAAAAGCTACAGCCGTACTTCTTAAGGGT
AGTAGGCAATACAAAGAGGACTTACCGCTTTGCCGAGAATTGGCAAGGGCTCAAGCTGAAGCCCACCAGAAAAGTTATGC
CTATTTTACTCAAGCGCAATGCTTACTACTTGAGGGGCAAAAAAGAGGTGCTATTGCTCAATTAAAAGTGGCGCAGAAAC
TGGCCAAAAAGGATGATTATTTATCTGCAAGAATTTCAGCAAAAATTGATGAAATAAAATTTATGGTTGAAAACTAA

Upstream 100 bases:

>100_bases
GCTTGTTCAAGTGCTGCAAGCAGAAACTGTTCGTGCATATATTAACCACCTTCTTAATGTGGTCGAATGATAACAAATTA
TTCAATTATTGAGTAGCCTA

Downstream 100 bases:

>100_bases
TCTAAATATAGATTAATTAATGCTTGCAAGCATCTCACTTCTGATAGGTCTTAAATGGAAACAAAATAGAACATATTTAT
CAAAAAGAAATTAGATGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSLSPYTTKELEQLEREFIQLINQSDSVERNPLASQYINSIGK
KLAHYGRIKTPYFFIVKSKEINAFAGPGGYIGINTQLILTSSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVPLLAS
ILASAALGVLNPTVGMGAMMASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGFNPQGMAAFFNKMQENSRYYYTANIPA
ILRTHPLDADRIAEAENRTSRLPKKNYTDSLDYALFKELIRVSVASNNKQILDYYEHHCHKKNPATACQYGYVLALLNNN
NFQKAAEKLNPLLLQDNSNLNFQIAMAQAELGLSQYQSALSRLAELQNNFPDNYAALMAYAQGLLTANQPQKATAVLLKG
SRQYKEDLPLCRELARAQAEAHQKSYAYFTQAQCLLLEGQKRGAIAQLKVAQKLAKKDDYLSARISAKIDEIKFMVEN

Sequences:

>Translated_478_residues
MIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSLSPYTTKELEQLEREFIQLINQSDSVERNPLASQYINSIGK
KLAHYGRIKTPYFFIVKSKEINAFAGPGGYIGINTQLILTSSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVPLLAS
ILASAALGVLNPTVGMGAMMASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGFNPQGMAAFFNKMQENSRYYYTANIPA
ILRTHPLDADRIAEAENRTSRLPKKNYTDSLDYALFKELIRVSVASNNKQILDYYEHHCHKKNPATACQYGYVLALLNNN
NFQKAAEKLNPLLLQDNSNLNFQIAMAQAELGLSQYQSALSRLAELQNNFPDNYAALMAYAQGLLTANQPQKATAVLLKG
SRQYKEDLPLCRELARAQAEAHQKSYAYFTQAQCLLLEGQKRGAIAQLKVAQKLAKKDDYLSARISAKIDEIKFMVEN
>Mature_478_residues
MIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSLSPYTTKELEQLEREFIQLINQSDSVERNPLASQYINSIGK
KLAHYGRIKTPYFFIVKSKEINAFAGPGGYIGINTQLILTSSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVPLLAS
ILASAALGVLNPTVGMGAMMASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGFNPQGMAAFFNKMQENSRYYYTANIPA
ILRTHPLDADRIAEAENRTSRLPKKNYTDSLDYALFKELIRVSVASNNKQILDYYEHHCHKKNPATACQYGYVLALLNNN
NFQKAAEKLNPLLLQDNSNLNFQIAMAQAELGLSQYQSALSRLAELQNNFPDNYAALMAYAQGLLTANQPQKATAVLLKG
SRQYKEDLPLCRELARAQAEAHQKSYAYFTQAQCLLLEGQKRGAIAQLKVAQKLAKKDDYLSARISAKIDEIKFMVEN

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=449, Percent_Identity=31.4031180400891, Blast_Score=192, Evalue=4e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 53651; Mature: 53651

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSLSPYTTKELEQLEREFIQLIN
CEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
QSDSVERNPLASQYINSIGKKLAHYGRIKTPYFFIVKSKEINAFAGPGGYIGINTQLILT
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEECCCCCEEEECEEEEEE
SSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVPLLASILASAALGVLNPTVGMGAMM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHH
ASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGFNPQGMAAFFNKMQENSRYYYTANIPA
HHHCCCCCCCCCCCCCCHHHHHHHCHHHHEECCCCCCHHHHHHHHHHHCCCEEEEECCCE
ILRTHPLDADRIAEAENRTSRLPKKNYTDSLDYALFKELIRVSVASNNKQILDYYEHHCH
EEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
KKNPATACQYGYVLALLNNNNFQKAAEKLNPLLLQDNSNLNFQIAMAQAELGLSQYQSAL
CCCCCCCCCCCEEEEEEECCCHHHHHHHCCCEEEECCCCCEEEEEEHHHHCCHHHHHHHH
SRLAELQNNFPDNYAALMAYAQGLLTANQPQKATAVLLKGSRQYKEDLPLCRELARAQAE
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHEEECCCHHHHHCCHHHHHHHHHHHH
AHQKSYAYFTQAQCLLLEGQKRGAIAQLKVAQKLAKKDDYLSARISAKIDEIKFMVEN
HHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEECC
>Mature Secondary Structure
MIKLNLNYKLITKKTLPKLFYWGLGIVFFFLAPTTNAGSLSPYTTKELEQLEREFIQLIN
CEEEECCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
QSDSVERNPLASQYINSIGKKLAHYGRIKTPYFFIVKSKEINAFAGPGGYIGINTQLILT
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEECCCCCEEEECEEEEEE
SSNESELAAVMAHEIAHVRLHHLYSIIEHQKQMRVPLLASILASAALGVLNPTVGMGAMM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHH
ASVSGFSQDNINFTRSKEKEADRIGIDMLIKAGFNPQGMAAFFNKMQENSRYYYTANIPA
HHHCCCCCCCCCCCCCCHHHHHHHCHHHHEECCCCCCHHHHHHHHHHHCCCEEEEECCCE
ILRTHPLDADRIAEAENRTSRLPKKNYTDSLDYALFKELIRVSVASNNKQILDYYEHHCH
EEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCC
KKNPATACQYGYVLALLNNNNFQKAAEKLNPLLLQDNSNLNFQIAMAQAELGLSQYQSAL
CCCCCCCCCCCEEEEEEECCCHHHHHHHCCCEEEECCCCCEEEEEEHHHHCCHHHHHHHH
SRLAELQNNFPDNYAALMAYAQGLLTANQPQKATAVLLKGSRQYKEDLPLCRELARAQAE
HHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHEEECCCHHHHHCCHHHHHHHHHHHH
AHQKSYAYFTQAQCLLLEGQKRGAIAQLKVAQKLAKKDDYLSARISAKIDEIKFMVEN
HHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]