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The map label for this gene is sdhC [H]

Identifier: 54293523

GI number: 54293523

Start: 620635

End: 621009

Strand: Direct

Name: sdhC [H]

Synonym: lpl0574

Alternate gene names: 54293523

Gene position: 620635-621009 (Clockwise)

Preceding gene: 54293520

Following gene: 54293524

Centisome position: 18.55

GC content: 37.33

Gene sequence:

>375_bases
GTGAACAAGAAAAGACCGATCAATCTTGATTTAAGCAGTTTGAAATTCCCGCCTATGGCTATCGCATCGATATTACATAG
GGTTTCAGGAGTTCTCATATTTTTATTATTTCCCTTCGTATTGTTTATTCTTGGTTGTTCCTTGCAATCAGAGGAATCTT
TTGCACAGACTAAAATAATTTTAGCTAATCCCTACTATAAACTTCTGTTATGGGCTTTTGGCGCCTCTATGATTTATCAT
GTCATTGCAGGTATAAGACATCTGATAATGGATATGGGATTTGGTGAGAGTCTTCGTGCTGGTCGTATGTCGGCCGTTTC
GATTATAGCTCTTGCAGTTATTTTGGCAATTTTTCTAGGAATCTGGATATGGTAA

Upstream 100 bases:

>100_bases
TCTCAATAAGTCGAAAGGGTGAATGTGAAATAATTGAATGGGATTCAATATTTAGAAGAAAATATATTGATGACATTTTC
TTATGAGGAAGAAATTAATA

Downstream 100 bases:

>100_bases
ACAATGTCACCAGCTTAACAGGAAATGGGTTAAAGGATTGGTTAATTCAAAGAGTTACAGCTGTCTATTTTGCAGCCTAT
TTAATTTTTTTATTTGGATT

Product: succinate dehydrogenase, cytochrome b556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MNKKRPINLDLSSLKFPPMAIASILHRVSGVLIFLLFPFVLFILGCSLQSEESFAQTKIILANPYYKLLLWAFGASMIYH
VIAGIRHLIMDMGFGESLRAGRMSAVSIIALAVILAIFLGIWIW

Sequences:

>Translated_124_residues
MNKKRPINLDLSSLKFPPMAIASILHRVSGVLIFLLFPFVLFILGCSLQSEESFAQTKIILANPYYKLLLWAFGASMIYH
VIAGIRHLIMDMGFGESLRAGRMSAVSIIALAVILAIFLGIWIW
>Mature_124_residues
MNKKRPINLDLSSLKFPPMAIASILHRVSGVLIFLLFPFVLFILGCSLQSEESFAQTKIILANPYYKLLLWAFGASMIYH
VIAGIRHLIMDMGFGESLRAGRMSAVSIIALAVILAIFLGIWIW

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=125, Percent_Identity=42.4, Blast_Score=113, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13853; Mature: 13853

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS01000 SDH_CYT_1 ; PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKRPINLDLSSLKFPPMAIASILHRVSGVLIFLLFPFVLFILGCSLQSEESFAQTKII
CCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LANPYYKLLLWAFGASMIYHVIAGIRHLIMDMGFGESLRAGRMSAVSIIALAVILAIFLG
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IWIW
HHCC
>Mature Secondary Structure
MNKKRPINLDLSSLKFPPMAIASILHRVSGVLIFLLFPFVLFILGCSLQSEESFAQTKII
CCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LANPYYKLLLWAFGASMIYHVIAGIRHLIMDMGFGESLRAGRMSAVSIIALAVILAIFLG
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IWIW
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7698664; 12704232 [H]