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The map label for this gene is 54293505

Identifier: 54293505

GI number: 54293505

Start: 602673

End: 603605

Strand: Direct

Name: 54293505

Synonym: lpl0554

Alternate gene names: NA

Gene position: 602673-603605 (Clockwise)

Preceding gene: 54293504

Following gene: 54293506

Centisome position: 18.01

GC content: 37.3

Gene sequence:

>933_bases
ATGGACAATTTATTGAATGAAAAAAAATTAACAATTTTTACATCTAATGAAATCCGAGATAATTTGAACCGGATTCTGAA
AGACTATGAACAAAATGGCATTATTGGACTTAATGGATATCTCAATCAGGCAAACCGAATAAGCTTGCTTAATGAACTTG
AGGTAATGCAAAAGGATGCTGAGCAGGATATTGCCAGGTATTGGAATAATAAAATCATTCATTTTTATTCCAAAGATCCT
TTGAAACCTGAGTCAGTGGATAGAGAATATGTCACAGAACCTTATTTTCAAGCTTCAAGTAATAAGGCACATGTATTTTA
TGAAGTGATTGATAATATGCGCGTAGTCAATCGAATTGGCCATGGTATGCATCTCATCAATAGGTATCCGATGATGCAGC
GAGCAGTTTATGATAGTACTGTGCTTCTGGATTTGCTAAAAGGGATTGGATTTAAGAAGCCGATCTGCCATCTCAGTGTC
TATATTCCCAAATATCCTAATGGAATAGGCAGTGAGGTAAGACCTCATCAGGAGTCAACATTTGCCTTTACTGAACCACA
AAGTGTCGTTGTTCTGTGGGTCGCCCTGGAAGACGCGTTAATTGAGAATGCCTGCATGTATGGGGTTTTAGGAAGTAATC
ATTGGCCATTGAAATGGGTATCAAAAGTGGACCGAGAGACAAAAACGCGTCACTTTGAGCAAGTTCATCAGTTACATATT
CCTGATTTTATAACTGAGCGTGAATTTTATACTGCCTTGGAAGTGAAAGCCGGAGATGCTTTGTTATTTCACGGTAATTT
TGTGCACTGCAGCCCAATGAATACGTCTAAAAACTCAAGAAAAGCATTGTCGTTTCAGTTTATTGAAACGTATGAAGTCG
ATTATCCGGAAACTAATTGGTTATACCCTCCTAACAAAGTGTATTTATATTAA

Upstream 100 bases:

>100_bases
AAACCAGATTCCCCATATATATTAAGCCTGCAAGCAGACGTTAATTTATTTCCTAGCATTTTACAATCAAATTTAGCCAT
GACATTGGTTTGGAGTTGTT

Downstream 100 bases:

>100_bases
AAATTAAATTTGATAAGCGATTGAGGAATCACTACATGTCTATGTATGATAAGCGCCAGTTTTTTAAAACCTATTTTTCT
AGTGCAAGCGAGAAGTCAAT

Product: hypothetical protein

Products: NA

Alternate protein names: Phytanoyl-CoA Dioxygenase Family Protein

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDNLLNEKKLTIFTSNEIRDNLNRILKDYEQNGIIGLNGYLNQANRISLLNELEVMQKDAEQDIARYWNNKIIHFYSKDP
LKPESVDREYVTEPYFQASSNKAHVFYEVIDNMRVVNRIGHGMHLINRYPMMQRAVYDSTVLLDLLKGIGFKKPICHLSV
YIPKYPNGIGSEVRPHQESTFAFTEPQSVVVLWVALEDALIENACMYGVLGSNHWPLKWVSKVDRETKTRHFEQVHQLHI
PDFITEREFYTALEVKAGDALLFHGNFVHCSPMNTSKNSRKALSFQFIETYEVDYPETNWLYPPNKVYLY

Sequences:

>Translated_310_residues
MDNLLNEKKLTIFTSNEIRDNLNRILKDYEQNGIIGLNGYLNQANRISLLNELEVMQKDAEQDIARYWNNKIIHFYSKDP
LKPESVDREYVTEPYFQASSNKAHVFYEVIDNMRVVNRIGHGMHLINRYPMMQRAVYDSTVLLDLLKGIGFKKPICHLSV
YIPKYPNGIGSEVRPHQESTFAFTEPQSVVVLWVALEDALIENACMYGVLGSNHWPLKWVSKVDRETKTRHFEQVHQLHI
PDFITEREFYTALEVKAGDALLFHGNFVHCSPMNTSKNSRKALSFQFIETYEVDYPETNWLYPPNKVYLY
>Mature_310_residues
MDNLLNEKKLTIFTSNEIRDNLNRILKDYEQNGIIGLNGYLNQANRISLLNELEVMQKDAEQDIARYWNNKIIHFYSKDP
LKPESVDREYVTEPYFQASSNKAHVFYEVIDNMRVVNRIGHGMHLINRYPMMQRAVYDSTVLLDLLKGIGFKKPICHLSV
YIPKYPNGIGSEVRPHQESTFAFTEPQSVVVLWVALEDALIENACMYGVLGSNHWPLKWVSKVDRETKTRHFEQVHQLHI
PDFITEREFYTALEVKAGDALLFHGNFVHCSPMNTSKNSRKALSFQFIETYEVDYPETNWLYPPNKVYLY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI154937350, Length=291, Percent_Identity=26.4604810996564, Blast_Score=105, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI17544346, Length=232, Percent_Identity=28.0172413793103, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI161078170, Length=296, Percent_Identity=31.0810810810811, Blast_Score=117, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36231; Mature: 36231

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNLLNEKKLTIFTSNEIRDNLNRILKDYEQNGIIGLNGYLNQANRISLLNELEVMQKDA
CCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCEEEECHHCCCCHHHHHHHHHHHHHHHH
EQDIARYWNNKIIHFYSKDPLKPESVDREYVTEPYFQASSNKAHVFYEVIDNMRVVNRIG
HHHHHHHHCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHC
HGMHLINRYPMMQRAVYDSTVLLDLLKGIGFKKPICHLSVYIPKYPNGIGSEVRPHQEST
CHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
FAFTEPQSVVVLWVALEDALIENACMYGVLGSNHWPLKWVSKVDRETKTRHFEQVHQLHI
EEEECCCCEEEEEEEHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDFITEREFYTALEVKAGDALLFHGNFVHCSPMNTSKNSRKALSFQFIETYEVDYPETNW
CCHHHCCHHHEEEEEECCCEEEEECCEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCC
LYPPNKVYLY
CCCCCEEEEC
>Mature Secondary Structure
MDNLLNEKKLTIFTSNEIRDNLNRILKDYEQNGIIGLNGYLNQANRISLLNELEVMQKDA
CCCCCCCCEEEEEECHHHHHHHHHHHHHHHCCCEEEECHHCCCCHHHHHHHHHHHHHHHH
EQDIARYWNNKIIHFYSKDPLKPESVDREYVTEPYFQASSNKAHVFYEVIDNMRVVNRIG
HHHHHHHHCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHC
HGMHLINRYPMMQRAVYDSTVLLDLLKGIGFKKPICHLSVYIPKYPNGIGSEVRPHQEST
CHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
FAFTEPQSVVVLWVALEDALIENACMYGVLGSNHWPLKWVSKVDRETKTRHFEQVHQLHI
EEEECCCCEEEEEEEHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDFITEREFYTALEVKAGDALLFHGNFVHCSPMNTSKNSRKALSFQFIETYEVDYPETNW
CCHHHCCHHHEEEEEECCCEEEEECCEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCC
LYPPNKVYLY
CCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA