Click here to switch to the map view.

The map label for this gene is 54293399

Identifier: 54293399

GI number: 54293399

Start: 494165

End: 494506

Strand: Direct

Name: 54293399

Synonym: lpl0448

Alternate gene names: NA

Gene position: 494165-494506 (Clockwise)

Preceding gene: 54293398

Following gene: 54293403

Centisome position: 14.77

GC content: 42.69

Gene sequence:

>342_bases
ATGTCAGACAAATTTTCACACATTACAAAAGATATCACTACGCAATTAGCCAAGTTTCGCAAAGAGATGCCAGAGTTAAT
GACTGGATTTTCTTCTTTAGCACAAGCTGCGACGAAAGACGGCGCACTGGATAAAAAAACCAAGGAATTAATCGCTATGG
CGTTGGCCGTGGCCAAGCAATGCCCCGGATGCATAGGGTTTCATTCACAAACTTTAGTGAAACTGCAAGCGACAAGAGAA
GAGTTACTGGAAACATTGGGTATGGCGGTTTATATGGGAGGCGGCCCTTCTTTAATGTATGCTGCAGAAGCATTGGAAGC
TTTTGAGGAATTTAGTAAGTAA

Upstream 100 bases:

>100_bases
ATTACTCACGTTAAATTAGGCGATACATCTTTTGCATCCCAATATTATGCTGTAAATTAGAGACGCTTGAAAAATATAAT
AAGGAAAGGAGTAGAGCCTC

Downstream 100 bases:

>100_bases
TTATCAAGAAGCTAAAGTTGCGTTTAATAAACACTAAAATCAATAAAAAAACAGCAAGGCAGAGTTTTTGCAAACATTGG
CAAGGGCATTCACAGTGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: ORF 7 [H]

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MSDKFSHITKDITTQLAKFRKEMPELMTGFSSLAQAATKDGALDKKTKELIAMALAVAKQCPGCIGFHSQTLVKLQATRE
ELLETLGMAVYMGGGPSLMYAAEALEAFEEFSK

Sequences:

>Translated_113_residues
MSDKFSHITKDITTQLAKFRKEMPELMTGFSSLAQAATKDGALDKKTKELIAMALAVAKQCPGCIGFHSQTLVKLQATRE
ELLETLGMAVYMGGGPSLMYAAEALEAFEEFSK
>Mature_112_residues
SDKFSHITKDITTQLAKFRKEMPELMTGFSSLAQAATKDGALDKKTKELIAMALAVAKQCPGCIGFHSQTLVKLQATREE
LLETLGMAVYMGGGPSLMYAAEALEAFEEFSK

Specific function: Unknown

COG id: COG0599

COG function: function code S; Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1053 and P.denitrificans COX locus Uncharacterized protein 4 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004675
- InterPro:   IPR003779 [H]

Pfam domain/function: PF02627 CMD [H]

EC number: NA

Molecular weight: Translated: 12295; Mature: 12164

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKFSHITKDITTQLAKFRKEMPELMTGFSSLAQAATKDGALDKKTKELIAMALAVAKQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
CPGCIGFHSQTLVKLQATREELLETLGMAVYMGGGPSLMYAAEALEAFEEFSK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDKFSHITKDITTQLAKFRKEMPELMTGFSSLAQAATKDGALDKKTKELIAMALAVAKQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
CPGCIGFHSQTLVKLQATREELLETLGMAVYMGGGPSLMYAAEALEAFEEFSK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2061286 [H]