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The map label for this gene is rutD [H]

Identifier: 54293243

GI number: 54293243

Start: 330447

End: 331241

Strand: Direct

Name: rutD [H]

Synonym: lpl0291

Alternate gene names: 54293243

Gene position: 330447-331241 (Clockwise)

Preceding gene: 54293237

Following gene: 54293244

Centisome position: 9.88

GC content: 40.5

Gene sequence:

>795_bases
ATGGCCACACTCAAGATTCATGGTGTTGATATTTATTATGAGCTCTATGGGCAAGGTAAACCTCTGGTTTTAATTGCAGG
CTATTGCTGTGATCACACCTTTTGGAACGCCATGCTCCATGAGTTGGCTGAAGAATTCCAGATATTGATATTTGACAATC
GCGGGATAGGGCAAACGAGAGACGATGGAGGTTCTTTTACATTAGAAGATCAGGCGGATGACATCATGGCTTTCCTGGAG
CAATTAGGTTTTAGAAACCCCTCTATTCTGGGGCAATCAATGGGTGGGGCTATTGCTCAACTGCTTGCAAGAAAGCATGG
TAAAAAAATCAGTAAATTGGTTATTTTAAATTCGGTTGCAAAATTCAATACGAGAGCAAACCAGGCTATGGAAAGCCTTT
TGAATTTGCGAAAGGAGAATATTTCATTCGATTTATTAATAGAGGCTGGAATACCATGGTTTTTTTCAAGCGAATATTTG
GCCGAGCCCAAAAATATCTCCATTTTTAAAGAGAGTTTGAAAAATAATCCTTATCCGCAATCCATACAAGATCAAGAGCG
GCAATTTAGAACCATTCCATCATTTGATTCTCGTGGGTGGCTACATGAGATTAAAGTGCCAACACTGGTTATTGCAGCCG
AGGAGGATATCCTTACCTTACCAGCAGAAAGTCAACAGCTTGCAGAAGGGATCCCTGACTCCCAATTCATTACCATTCCA
GGAGGGCATTCCAGTCCTTTAGAACAACCCACAAAAGTCAATGAAGTCATACTAAAATTTTTAACCTCTTCCTAA

Upstream 100 bases:

>100_bases
TGACTTAATTCATCGAAACAATAGATAATTGAGGCGAAAAGTCATTGAATGAAGCGTTGCGTTTGTTCGTCAAAAAAATC
AATTAAGGAGTTTTTGCGAC

Downstream 100 bases:

>100_bases
AAAAGGTGCTGAATAAATGGAAATTTACGAAATGTACATTGATGGAAAATTTACTTTAGCCAAAAGCGGGGCTACTCGGG
ACATTATTGATCCAGCTAAT

Product: hypothetical protein

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MATLKIHGVDIYYELYGQGKPLVLIAGYCCDHTFWNAMLHELAEEFQILIFDNRGIGQTRDDGGSFTLEDQADDIMAFLE
QLGFRNPSILGQSMGGAIAQLLARKHGKKISKLVILNSVAKFNTRANQAMESLLNLRKENISFDLLIEAGIPWFFSSEYL
AEPKNISIFKESLKNNPYPQSIQDQERQFRTIPSFDSRGWLHEIKVPTLVIAAEEDILTLPAESQQLAEGIPDSQFITIP
GGHSSPLEQPTKVNEVILKFLTSS

Sequences:

>Translated_264_residues
MATLKIHGVDIYYELYGQGKPLVLIAGYCCDHTFWNAMLHELAEEFQILIFDNRGIGQTRDDGGSFTLEDQADDIMAFLE
QLGFRNPSILGQSMGGAIAQLLARKHGKKISKLVILNSVAKFNTRANQAMESLLNLRKENISFDLLIEAGIPWFFSSEYL
AEPKNISIFKESLKNNPYPQSIQDQERQFRTIPSFDSRGWLHEIKVPTLVIAAEEDILTLPAESQQLAEGIPDSQFITIP
GGHSSPLEQPTKVNEVILKFLTSS
>Mature_263_residues
ATLKIHGVDIYYELYGQGKPLVLIAGYCCDHTFWNAMLHELAEEFQILIFDNRGIGQTRDDGGSFTLEDQADDIMAFLEQ
LGFRNPSILGQSMGGAIAQLLARKHGKKISKLVILNSVAKFNTRANQAMESLLNLRKENISFDLLIEAGIPWFFSSEYLA
EPKNISIFKESLKNNPYPQSIQDQERQFRTIPSFDSRGWLHEIKVPTLVIAAEEDILTLPAESQQLAEGIPDSQFITIPG
GHSSPLEQPTKVNEVILKFLTSS

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

Organism=Escherichia coli, GI1787244, Length=244, Percent_Identity=22.9508196721311, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 29586; Mature: 29455

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLKIHGVDIYYELYGQGKPLVLIAGYCCDHTFWNAMLHELAEEFQILIFDNRGIGQTR
CCEEEEECEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCC
DDGGSFTLEDQADDIMAFLEQLGFRNPSILGQSMGGAIAQLLARKHGKKISKLVILNSVA
CCCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
KFNTRANQAMESLLNLRKENISFDLLIEAGIPWFFSSEYLAEPKNISIFKESLKNNPYPQ
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEECCHHHCCCCCHHHHHHHHCCCCCCC
SIQDQERQFRTIPSFDSRGWLHEIKVPTLVIAAEEDILTLPAESQQLAEGIPDSQFITIP
CHHHHHHHHHCCCCCCCCCCEEEECCCEEEEEECCCEEECCCCHHHHHCCCCCCCEEEEC
GGHSSPLEQPTKVNEVILKFLTSS
CCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
ATLKIHGVDIYYELYGQGKPLVLIAGYCCDHTFWNAMLHELAEEFQILIFDNRGIGQTR
CEEEEECEEEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCC
DDGGSFTLEDQADDIMAFLEQLGFRNPSILGQSMGGAIAQLLARKHGKKISKLVILNSVA
CCCCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
KFNTRANQAMESLLNLRKENISFDLLIEAGIPWFFSSEYLAEPKNISIFKESLKNNPYPQ
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEECCHHHCCCCCHHHHHHHHCCCCCCC
SIQDQERQFRTIPSFDSRGWLHEIKVPTLVIAAEEDILTLPAESQQLAEGIPDSQFITIP
CHHHHHHHHHCCCCCCCCCCEEEECCCEEEEEECCCEEECCCCHHHHHCCCCCCCEEEEC
GGHSSPLEQPTKVNEVILKFLTSS
CCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA