Click here to switch to the map view.

The map label for this gene is 54293232

Identifier: 54293232

GI number: 54293232

Start: 312213

End: 313610

Strand: Direct

Name: 54293232

Synonym: lpl0280

Alternate gene names: NA

Gene position: 312213-313610 (Clockwise)

Preceding gene: 54293231

Following gene: 54293233

Centisome position: 9.33

GC content: 39.27

Gene sequence:

>1398_bases
ATGATTTGTTTTCCTTCAGGCAAAAACAAATTGGTTGTCTTATGTTTGCTCTTGATGTTGTCATTCAAGAGTTTTCCAAT
ACCAGGCAAACCTTTGCTGCTTGATGCCGTACTTAAAAGTGTTGATCGAAGTTACCCCCAGATAGTCATAGCGCGTCTTG
AAATCAGAAAAGCGGAAGGCGATTATGTCAATGCATTAGGAAAATTTGACCCCTCTTTCGATGTGAATCCCCGCTTCCAG
CCGGTCGGGGGGTATATTAATAATTACGCAGATAATCTTTTTAATGTGCCAACCCTCTATAATGGGCTTAAATTGTTTGG
AGGCTATCGTATTGGTAGAGGTGATTGGCCTATTTACTATCAAAATTACCTGACTAACTCTGGTGGTGAATATCGTGCGG
GCCTTTCTTTACCTTTGCTGAGAGACAGGCGAATTGATAAAGAGCGTACCGAGCTTTTTACAAGAGAAGAAACAATTCGC
ATGAAACAGCAGGATGCTGCCGCTACAAAAATTAAAATTTATCAGGAAACTATTAAAGCCTATTGGCAATGGGTTGAGGC
GGGTTTCCAATTAAGAACTTTCAGGCATTTGCTGAATTTAGCGAAAGAGCGGCAAAATGCGATTATTCAACAAGCTCAAC
AAGGTGATTTGCCTAGACTTGCCATTGCAGAAAATTTACAACTTATTGTTCAACGTGAACAACTGGTCAATCAAGGAGAA
ATGTTATTGGCACAGGCGGGCATCAATCTTTCACTTTACTATCGTGACGCAAAGGGCAAACCGCAAAAACCGGATGAAAG
TCAATTACCGGCAACATTTCCTGCTCAACCAATTCGAGTATCCAATAGTATTTCACAGTTACAACGGCATCCAGTTTTGC
GTAAATTGGAGAATTATTCAAAAATTGTTAAATTAAAACAAAATCTAGCAAGAAATGAGCTTCTGCCTAATCTTGATGCG
ACAGCTTATACCTTTAAACAATATGGAACAGGCGGTTATCCTTTATTGATCCCTCAGGCTGCTATGATCGGCGTGAATTT
TAAATTTCCTATTTTTCAACGTGAAGCAAGAGGAAAGCTTATCAGCACCACGAGTGAATTACAGCAAGTAAAAACGGAAA
TGAAATTTACCTACGAACAGTTAAATAACGAGCTGTCCAATCTCTTGGTTGCAATAAGAATATATCAGCAGCAAGTGGTT
TTGCTTAATAAAGAGTTAAATCTTGCACGGCAAGTAGAGAAGGGGGAAACCAAGAGATTTTATGAAGGTGATAGCACGCT
TTTTTTAGTGAATCAACGTGAACAAACAACAGCGCAAGTCAAGTTAAATTGGATTAATGCAGAAGTCAATTTACAAGAGG
CTACGGCTTTAGCGAGATTTTTTTCTTCCACGCAATAA

Upstream 100 bases:

>100_bases
TGCATGGCTGGGTTCAATTGGGCCAAGTTCCTTTATGGTATGAGCTTTGGCGTCAATATAATGGTTTCCCGCCGGAAAGT
GATCGCGAGAATAAAGCATC

Downstream 100 bases:

>100_bases
TAACGGATGTCAATTGGAGACCCACTTGATAAATAGCTTGCTTACCCACAGGCGAGGCAAAAGATAATTGTTAGCTACTT
GCACTCCCCCTTGGCATATG

Product: hypothetical protein

Products: NA

Alternate protein names: Outer Membrane Component Of Multidrug Efflux Pump; Outer Membrane Protein-Like Protein; Outer Membrane Protein; Outer Membrane Protein-Like; Signal Peptide; Multidrug Efflux Protein Outer Membrane Component

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MICFPSGKNKLVVLCLLLMLSFKSFPIPGKPLLLDAVLKSVDRSYPQIVIARLEIRKAEGDYVNALGKFDPSFDVNPRFQ
PVGGYINNYADNLFNVPTLYNGLKLFGGYRIGRGDWPIYYQNYLTNSGGEYRAGLSLPLLRDRRIDKERTELFTREETIR
MKQQDAAATKIKIYQETIKAYWQWVEAGFQLRTFRHLLNLAKERQNAIIQQAQQGDLPRLAIAENLQLIVQREQLVNQGE
MLLAQAGINLSLYYRDAKGKPQKPDESQLPATFPAQPIRVSNSISQLQRHPVLRKLENYSKIVKLKQNLARNELLPNLDA
TAYTFKQYGTGGYPLLIPQAAMIGVNFKFPIFQREARGKLISTTSELQQVKTEMKFTYEQLNNELSNLLVAIRIYQQQVV
LLNKELNLARQVEKGETKRFYEGDSTLFLVNQREQTTAQVKLNWINAEVNLQEATALARFFSSTQ

Sequences:

>Translated_465_residues
MICFPSGKNKLVVLCLLLMLSFKSFPIPGKPLLLDAVLKSVDRSYPQIVIARLEIRKAEGDYVNALGKFDPSFDVNPRFQ
PVGGYINNYADNLFNVPTLYNGLKLFGGYRIGRGDWPIYYQNYLTNSGGEYRAGLSLPLLRDRRIDKERTELFTREETIR
MKQQDAAATKIKIYQETIKAYWQWVEAGFQLRTFRHLLNLAKERQNAIIQQAQQGDLPRLAIAENLQLIVQREQLVNQGE
MLLAQAGINLSLYYRDAKGKPQKPDESQLPATFPAQPIRVSNSISQLQRHPVLRKLENYSKIVKLKQNLARNELLPNLDA
TAYTFKQYGTGGYPLLIPQAAMIGVNFKFPIFQREARGKLISTTSELQQVKTEMKFTYEQLNNELSNLLVAIRIYQQQVV
LLNKELNLARQVEKGETKRFYEGDSTLFLVNQREQTTAQVKLNWINAEVNLQEATALARFFSSTQ
>Mature_465_residues
MICFPSGKNKLVVLCLLLMLSFKSFPIPGKPLLLDAVLKSVDRSYPQIVIARLEIRKAEGDYVNALGKFDPSFDVNPRFQ
PVGGYINNYADNLFNVPTLYNGLKLFGGYRIGRGDWPIYYQNYLTNSGGEYRAGLSLPLLRDRRIDKERTELFTREETIR
MKQQDAAATKIKIYQETIKAYWQWVEAGFQLRTFRHLLNLAKERQNAIIQQAQQGDLPRLAIAENLQLIVQREQLVNQGE
MLLAQAGINLSLYYRDAKGKPQKPDESQLPATFPAQPIRVSNSISQLQRHPVLRKLENYSKIVKLKQNLARNELLPNLDA
TAYTFKQYGTGGYPLLIPQAAMIGVNFKFPIFQREARGKLISTTSELQQVKTEMKFTYEQLNNELSNLLVAIRIYQQQVV
LLNKELNLARQVEKGETKRFYEGDSTLFLVNQREQTTAQVKLNWINAEVNLQEATALARFFSSTQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53294; Mature: 53294

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MICFPSGKNKLVVLCLLLMLSFKSFPIPGKPLLLDAVLKSVDRSYPQIVIARLEIRKAEG
CEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHEEEEEHHEECCCC
DYVNALGKFDPSFDVNPRFQPVGGYINNYADNLFNVPTLYNGLKLFGGYRIGRGDWPIYY
CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCEEECCCCCCEEE
QNYLTNSGGEYRAGLSLPLLRDRRIDKERTELFTREETIRMKQQDAAATKIKIYQETIKA
HHHCCCCCCCEECCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YWQWVEAGFQLRTFRHLLNLAKERQNAIIQQAQQGDLPRLAIAENLQLIVQREQLVNQGE
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
MLLAQAGINLSLYYRDAKGKPQKPDESQLPATFPAQPIRVSNSISQLQRHPVLRKLENYS
EEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCHHHHHHHHHH
KIVKLKQNLARNELLPNLDATAYTFKQYGTGGYPLLIPQAAMIGVNFKFPIFQREARGKL
HHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEECCCEEEECCEECCCHHHHHCCCE
ISTTSELQQVKTEMKFTYEQLNNELSNLLVAIRIYQQQVVLLNKELNLARQVEKGETKRF
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHCCCCCEE
YEGDSTLFLVNQREQTTAQVKLNWINAEVNLQEATALARFFSSTQ
ECCCCEEEEEECCCCCEEEEEEEEEECEECHHHHHHHHHHHHCCC
>Mature Secondary Structure
MICFPSGKNKLVVLCLLLMLSFKSFPIPGKPLLLDAVLKSVDRSYPQIVIARLEIRKAEG
CEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHEEEEEHHEECCCC
DYVNALGKFDPSFDVNPRFQPVGGYINNYADNLFNVPTLYNGLKLFGGYRIGRGDWPIYY
CHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCEEECCCCCCEEE
QNYLTNSGGEYRAGLSLPLLRDRRIDKERTELFTREETIRMKQQDAAATKIKIYQETIKA
HHHCCCCCCCEECCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YWQWVEAGFQLRTFRHLLNLAKERQNAIIQQAQQGDLPRLAIAENLQLIVQREQLVNQGE
HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
MLLAQAGINLSLYYRDAKGKPQKPDESQLPATFPAQPIRVSNSISQLQRHPVLRKLENYS
EEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCHHHHHHHHHH
KIVKLKQNLARNELLPNLDATAYTFKQYGTGGYPLLIPQAAMIGVNFKFPIFQREARGKL
HHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCEEEECCCEEEECCEECCCHHHHHCCCE
ISTTSELQQVKTEMKFTYEQLNNELSNLLVAIRIYQQQVVLLNKELNLARQVEKGETKRF
EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHCCCCCEE
YEGDSTLFLVNQREQTTAQVKLNWINAEVNLQEATALARFFSSTQ
ECCCCEEEEEECCCCCEEEEEEEEEECEECHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA