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The map label for this gene is dgdR [H]

Identifier: 54293229

GI number: 54293229

Start: 308751

End: 309602

Strand: Direct

Name: dgdR [H]

Synonym: lpl0277

Alternate gene names: 54293229

Gene position: 308751-309602 (Clockwise)

Preceding gene: 54293222

Following gene: 54293230

Centisome position: 9.23

GC content: 40.26

Gene sequence:

>852_bases
ATGTCAATTGATACAATCACACTACAATGCTTTCTGGCAGTGGCTGAAACGCAAAGTTTTACCAAGGCGGCACAGCGGGT
TGGACGCACCCAATCGGCTATCAGTCAGCAAATAGCTAAATTGGAAAACCTGATTGAAAAACCTCTAATTAATCGTGGCC
GAGAACTTTCTCTGACCACGGACGGTGAAATATTTTTAGGGTATGCCAAACGAATTTATGAATTGCATCGAGAATCTTTG
GATCGTTTTAAAGCGCCTGAGTTACAAGGTGAAATACGCTTCGGATTACCAGAGGATTTTGCCAGTATTATTTTATCGGA
CGTACTTGTTGAATTTTCAAGATTGCATCCACGAGTCTTATTGAATGTAGAATGTGATCTGACTCTGAATCTGATCGAGC
GTTTTAATGAAGGTAAATTTGACTTAATTCTCATTAAAACAACTCAGCAGCAGGTTGGTTCTGAGTTTATCCATGTTTGC
ACAGAATCCGTTGAGTGGATAGGGAAAAAAGAATTATTACCTCTTTTAGACAAACCGGGGCCAATTCCCTTAGTGCTTTC
ACCAACACCCTGCGTTTATCGAGGCAATGTGATTGATACACTGGATAAAAACCATATTGATTGGCGCCTTGTTTACAGTA
GCGCAAGTTATGCGGGAAAAATGGCAGCTGTGCGCGCCGGGTTAGGGATTACTGCTATTCAGCGCAGCATGATCCCAAAC
TATCTGGAACGGCTCGATTACGATTTTCTCCCTGTTTTGAATGATGTCCATGTCTCTTTATTAAAAAAGAGTGAAAGCAA
TAAAGCAATTGAATCGCTTGAGTTTTTTATACTGCAAAAATTAAAACATTAA

Upstream 100 bases:

>100_bases
TTAATTCTCCATTAGAAAATCTGTTATTATTGTGGAAATATATTAGATGTGTTAATATAAGTAAAATTAAAAATAATGAT
TTAAACTATTAGAAAAACTT

Downstream 100 bases:

>100_bases
TAGCATAAACAAGAATCAAGGGTAAAAGGGATGTTTAGGGAATGAATGCAAAACCAATTAATTCAATTATTGATGTATTA
GATCGCCAAACAATCTCATC

Product: hypothetical protein

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSIDTITLQCFLAVAETQSFTKAAQRVGRTQSAISQQIAKLENLIEKPLINRGRELSLTTDGEIFLGYAKRIYELHRESL
DRFKAPELQGEIRFGLPEDFASIILSDVLVEFSRLHPRVLLNVECDLTLNLIERFNEGKFDLILIKTTQQQVGSEFIHVC
TESVEWIGKKELLPLLDKPGPIPLVLSPTPCVYRGNVIDTLDKNHIDWRLVYSSASYAGKMAAVRAGLGITAIQRSMIPN
YLERLDYDFLPVLNDVHVSLLKKSESNKAIESLEFFILQKLKH

Sequences:

>Translated_283_residues
MSIDTITLQCFLAVAETQSFTKAAQRVGRTQSAISQQIAKLENLIEKPLINRGRELSLTTDGEIFLGYAKRIYELHRESL
DRFKAPELQGEIRFGLPEDFASIILSDVLVEFSRLHPRVLLNVECDLTLNLIERFNEGKFDLILIKTTQQQVGSEFIHVC
TESVEWIGKKELLPLLDKPGPIPLVLSPTPCVYRGNVIDTLDKNHIDWRLVYSSASYAGKMAAVRAGLGITAIQRSMIPN
YLERLDYDFLPVLNDVHVSLLKKSESNKAIESLEFFILQKLKH
>Mature_282_residues
SIDTITLQCFLAVAETQSFTKAAQRVGRTQSAISQQIAKLENLIEKPLINRGRELSLTTDGEIFLGYAKRIYELHRESLD
RFKAPELQGEIRFGLPEDFASIILSDVLVEFSRLHPRVLLNVECDLTLNLIERFNEGKFDLILIKTTQQQVGSEFIHVCT
ESVEWIGKKELLPLLDKPGPIPLVLSPTPCVYRGNVIDTLDKNHIDWRLVYSSASYAGKMAAVRAGLGITAIQRSMIPNY
LERLDYDFLPVLNDVHVSLLKKSESNKAIESLEFFILQKLKH

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=272, Percent_Identity=34.5588235294118, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787806, Length=239, Percent_Identity=25.9414225941423, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI157672245, Length=117, Percent_Identity=35.042735042735, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32070; Mature: 31938

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIDTITLQCFLAVAETQSFTKAAQRVGRTQSAISQQIAKLENLIEKPLINRGRELSLTT
CCCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
DGEIFLGYAKRIYELHRESLDRFKAPELQGEIRFGLPEDFASIILSDVLVEFSRLHPRVL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCEEE
LNVECDLTLNLIERFNEGKFDLILIKTTQQQVGSEFIHVCTESVEWIGKKELLPLLDKPG
EEEECCHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC
PIPLVLSPTPCVYRGNVIDTLDKNHIDWRLVYSSASYAGKMAAVRAGLGITAIQRSMIPN
CEEEEECCCCCEEECCCHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHH
YLERLDYDFLPVLNDVHVSLLKKSESNKAIESLEFFILQKLKH
HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SIDTITLQCFLAVAETQSFTKAAQRVGRTQSAISQQIAKLENLIEKPLINRGRELSLTT
CCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
DGEIFLGYAKRIYELHRESLDRFKAPELQGEIRFGLPEDFASIILSDVLVEFSRLHPRVL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHCCCEEE
LNVECDLTLNLIERFNEGKFDLILIKTTQQQVGSEFIHVCTESVEWIGKKELLPLLDKPG
EEEECCHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC
PIPLVLSPTPCVYRGNVIDTLDKNHIDWRLVYSSASYAGKMAAVRAGLGITAIQRSMIPN
CEEEEECCCCCEEECCCHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHH
YLERLDYDFLPVLNDVHVSLLKKSESNKAIESLEFFILQKLKH
HHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]