Click here to switch to the map view.

The map label for this gene is ccmC [H]

Identifier: 54296879

GI number: 54296879

Start: 1026662

End: 1027417

Strand: Direct

Name: ccmC [H]

Synonym: lpp0920

Alternate gene names: 54296879

Gene position: 1026662-1027417 (Clockwise)

Preceding gene: 54296878

Following gene: 54296880

Centisome position: 29.3

GC content: 40.08

Gene sequence:

>756_bases
ATGTGGAAGATATTGTATCAGTTGGCATCGCCAAAAAATTTTTATAACTACGCGGGACGTCTCATTCCCTGGTTGGCAGT
CAGTGCTTTGACTACCATGGCCATTGGTATGGTTTGGGGATTGGTATTTGCTCCACCAGATTATCAGCAAGGGGATGCAT
ACCGAATTATTTTTGTTCATGTACCCAGCGCTTTTTTATCAATGGCATTGTATGCCTGGATGGGGTTTCTGGCCATTTTA
TTGTTGGTGTGGCGTATCAAAATGGCAGGGCTTTTGATTCATAAGGTCGCGCAATTAGGTGCCTGCATGGCATTTCTTGC
TTTAATTACAGGGAGCATTTGGGGTAAACCCATGTGGGGTGCCTGGTGGGTATGGGATGCCCGCCTGACCTCAGAATTAA
TACTTTTGTTGCTCTATCTGGCAATTCTGGCTACCTATCAAGCGGTAAAAAATAAAGAAGATGGAGATAAAATAATAGCA
ATTTTAGCTTTGGTGGGTTTAATTGATTTACCAATAATTCATTATTCAGTTTATTGGTGGAATACTTTACACCAAGGTGC
AACTTTATCTGTGTTTGCCAAACCCAAAATTGCTCTCAGTATGTTGTATCCATTGTTAATCACTTTGCTGGGTTTTTTCT
TGTATTCCTTATGGATCATTTTGGAAAAAGCACGTAATGAAGTCTTATTCAGGGAGAGAAAGCAATCATGGGTTAAGATT
CAATTTGAGGAAGAGTCTGATGAATCAGTTTTTTGA

Upstream 100 bases:

>100_bases
CTCAAGCGAGCGAAATGTCAACAGACCCTAAGTTTGGAACTAAATTTTGTGATTGTTTTGATGCGTGGTAGAATCCTTCT
TTTTGATTTTATTGTTTCCT

Downstream 100 bases:

>100_bases
ATGGTTGGCAATGGGCGGTTATTCTCTCTATGTTTGGCCTGCTTATGGTTTGGTTTGCGTGGTTTTGGGCATGAATATTT
TAGGAATAAAGTGGCAAAGA

Product: heme exporter protein CcmC

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmC [H]

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MWKILYQLASPKNFYNYAGRLIPWLAVSALTTMAIGMVWGLVFAPPDYQQGDAYRIIFVHVPSAFLSMALYAWMGFLAIL
LLVWRIKMAGLLIHKVAQLGACMAFLALITGSIWGKPMWGAWWVWDARLTSELILLLLYLAILATYQAVKNKEDGDKIIA
ILALVGLIDLPIIHYSVYWWNTLHQGATLSVFAKPKIALSMLYPLLITLLGFFLYSLWIILEKARNEVLFRERKQSWVKI
QFEEESDESVF

Sequences:

>Translated_251_residues
MWKILYQLASPKNFYNYAGRLIPWLAVSALTTMAIGMVWGLVFAPPDYQQGDAYRIIFVHVPSAFLSMALYAWMGFLAIL
LLVWRIKMAGLLIHKVAQLGACMAFLALITGSIWGKPMWGAWWVWDARLTSELILLLLYLAILATYQAVKNKEDGDKIIA
ILALVGLIDLPIIHYSVYWWNTLHQGATLSVFAKPKIALSMLYPLLITLLGFFLYSLWIILEKARNEVLFRERKQSWVKI
QFEEESDESVF
>Mature_251_residues
MWKILYQLASPKNFYNYAGRLIPWLAVSALTTMAIGMVWGLVFAPPDYQQGDAYRIIFVHVPSAFLSMALYAWMGFLAIL
LLVWRIKMAGLLIHKVAQLGACMAFLALITGSIWGKPMWGAWWVWDARLTSELILLLLYLAILATYQAVKNKEDGDKIIA
ILALVGLIDLPIIHYSVYWWNTLHQGATLSVFAKPKIALSMLYPLLITLLGFFLYSLWIILEKARNEVLFRERKQSWVKI
QFEEESDESVF

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmC/CycZ/HelC family [H]

Homologues:

Organism=Escherichia coli, GI1788527, Length=239, Percent_Identity=48.9539748953975, Blast_Score=242, Evalue=2e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003557 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 28767; Mature: 28767

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKILYQLASPKNFYNYAGRLIPWLAVSALTTMAIGMVWGLVFAPPDYQQGDAYRIIFVH
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEE
VPSAFLSMALYAWMGFLAILLLVWRIKMAGLLIHKVAQLGACMAFLALITGSIWGKPMWG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AWWVWDARLTSELILLLLYLAILATYQAVKNKEDGDKIIAILALVGLIDLPIIHYSVYWW
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NTLHQGATLSVFAKPKIALSMLYPLLITLLGFFLYSLWIILEKARNEVLFRERKQSWVKI
HHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
QFEEESDESVF
EEECCCCCCCC
>Mature Secondary Structure
MWKILYQLASPKNFYNYAGRLIPWLAVSALTTMAIGMVWGLVFAPPDYQQGDAYRIIFVH
CHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEE
VPSAFLSMALYAWMGFLAILLLVWRIKMAGLLIHKVAQLGACMAFLALITGSIWGKPMWG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AWWVWDARLTSELILLLLYLAILATYQAVKNKEDGDKIIAILALVGLIDLPIIHYSVYWW
EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NTLHQGATLSVFAKPKIALSMLYPLLITLLGFFLYSLWIILEKARNEVLFRERKQSWVKI
HHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
QFEEESDESVF
EEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]