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The map label for this gene is ccmB [H]

Identifier: 54296878

GI number: 54296878

Start: 1025768

End: 1026448

Strand: Direct

Name: ccmB [H]

Synonym: lpp0919

Alternate gene names: 54296878

Gene position: 1025768-1026448 (Clockwise)

Preceding gene: 54296877

Following gene: 54296879

Centisome position: 29.28

GC content: 38.62

Gene sequence:

>681_bases
ATGAATTCCCCATTTCAATTATTCGGAAAACAGTTCAGGCGTGAAATATTAATCCAGGTGCGGCAAATCAGATATTTAGT
TAATTCGTGTTTATTTTTTTTAATGTTGTTATTTATTTTCCCTCTTACTCTAAGACCAGAATTAATGTTGATGCGTATGT
TTGCTCCCGGATTAGTGTGGATGGCCATTTTGTTATCCATGCTTCTTTCGTTAGAACGGTTGTTTCAACAAGATTATGAA
CAAGGAGTCCTTGAACAGTGGCTAGTTTCAGGGCAACCATTAAATCTCCTTGTGACAGCCAAAGTTATGGCACACTGGTT
GATATCCGTGACTCCGTTATTATTATTATCTCCTTTGATTGCAATATTATTTTCATTCAATGTTTGGGAAACATGTATAT
TGTTATTGAGCCTTATTTGCGGGACGCCTGCCATATTATTTTTATGTGCGCTTGCAGCAGCTTTTGGTATAGGGATAAAT
CAGCGTGGGGCTTTGATGGCATTGATTCTATTACCGTTAACTTTACCTTTACTGATATTTGGTAGTGGTACTTTGAGCGT
TGCGATGCAAGGTTTGCCGGTCAGCGGCTATCTGGCTTTATTATTGGCGATGTCTCTATTGGCTGTTGGTTTTCTACCTT
ATGCGATTGCGGCAGTGATACGTATTAGTCATATAGACTAG

Upstream 100 bases:

>100_bases
TCACAAAAATCCAGGAGCACAGGGCAAAAGGTGGTGCTGTATTATTGACCTCTCATCAGGATTTGCCTTTAAACAAGGCG
GATTATGAGGAGTATCATCT

Downstream 100 bases:

>100_bases
GGTCTGTTGACATTTCTACTATCTTGGCCGAAAAGCCTTGATTGTCTGTGCTCCGTTACTCACATACTTCTATGTATGCT
CCGCTACGGTGCTCGAAAAT

Product: heme exporter protein CcmB

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmB [H]

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MNSPFQLFGKQFRREILIQVRQIRYLVNSCLFFLMLLFIFPLTLRPELMLMRMFAPGLVWMAILLSMLLSLERLFQQDYE
QGVLEQWLVSGQPLNLLVTAKVMAHWLISVTPLLLLSPLIAILFSFNVWETCILLLSLICGTPAILFLCALAAAFGIGIN
QRGALMALILLPLTLPLLIFGSGTLSVAMQGLPVSGYLALLLAMSLLAVGFLPYAIAAVIRISHID

Sequences:

>Translated_226_residues
MNSPFQLFGKQFRREILIQVRQIRYLVNSCLFFLMLLFIFPLTLRPELMLMRMFAPGLVWMAILLSMLLSLERLFQQDYE
QGVLEQWLVSGQPLNLLVTAKVMAHWLISVTPLLLLSPLIAILFSFNVWETCILLLSLICGTPAILFLCALAAAFGIGIN
QRGALMALILLPLTLPLLIFGSGTLSVAMQGLPVSGYLALLLAMSLLAVGFLPYAIAAVIRISHID
>Mature_226_residues
MNSPFQLFGKQFRREILIQVRQIRYLVNSCLFFLMLLFIFPLTLRPELMLMRMFAPGLVWMAILLSMLLSLERLFQQDYE
QGVLEQWLVSGQPLNLLVTAKVMAHWLISVTPLLLLSPLIAILFSFNVWETCILLLSLICGTPAILFLCALAAAFGIGIN
QRGALMALILLPLTLPLLIFGSGTLSVAMQGLPVSGYLALLLAMSLLAVGFLPYAIAAVIRISHID

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes [H]

COG id: COG2386

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmB/CycW/HelB family [H]

Homologues:

Organism=Escherichia coli, GI1788528, Length=217, Percent_Identity=42.8571428571429, Blast_Score=138, Evalue=3e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003544 [H]

Pfam domain/function: PF03379 CcmB [H]

EC number: NA

Molecular weight: Translated: 25134; Mature: 25134

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSPFQLFGKQFRREILIQVRQIRYLVNSCLFFLMLLFIFPLTLRPELMLMRMFAPGLVW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
MAILLSMLLSLERLFQQDYEQGVLEQWLVSGQPLNLLVTAKVMAHWLISVTPLLLLSPLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AILFSFNVWETCILLLSLICGTPAILFLCALAAAFGIGINQRGALMALILLPLTLPLLIF
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
GSGTLSVAMQGLPVSGYLALLLAMSLLAVGFLPYAIAAVIRISHID
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNSPFQLFGKQFRREILIQVRQIRYLVNSCLFFLMLLFIFPLTLRPELMLMRMFAPGLVW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
MAILLSMLLSLERLFQQDYEQGVLEQWLVSGQPLNLLVTAKVMAHWLISVTPLLLLSPLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AILFSFNVWETCILLLSLICGTPAILFLCALAAAFGIGINQRGALMALILLPLTLPLLIF
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
GSGTLSVAMQGLPVSGYLALLLAMSLLAVGFLPYAIAAVIRISHID
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]