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The map label for this gene is oppB

Identifier: 54020551

GI number: 54020551

Start: 629454

End: 630494

Strand: Reverse

Name: oppB

Synonym: mhp501

Alternate gene names: 54020551

Gene position: 630494-629454 (Counterclockwise)

Preceding gene: 54020552

Following gene: 54020550

Centisome position: 70.62

GC content: 33.14

Gene sequence:

>1041_bases
ATGGCGCTGAAATACTTTTTTAAACGGCTTTTACTTGCTTTAATTACATTTTTAGCAATTTATATAATTGTTTTTGTCTT
GCTTGCTAATTTTTCTCCTGATCCTTTTGGTGATTTAGTTGAAAAAGGATCAAAAGTAGCCGATCAAGGGAAAAAACTTG
CTGATTTACGGGCAAAATACCATTTTGATCAATCAACTTTAGCCCGACTTTGATTTTATACAGCAGAAGTTTTTAAAGGA
AATTTTGGCCCGATTTATAAAACCGGTGAAGATGGCCAAATTCCTAGTTTGTTTTTTGGCCCTTTACGTTATACAATTTT
AGTTTCTCTTCCATCTTTTTTAATTAGTGCTTTTCTAGGAGTTATTCTTGGAACAGTTGCTGCTTATCGCCGCGATCGGA
TCGAAGATGCCGCAATTAGTGGGATCTCAACTTTTTTTGTAGCAATTCCTTCGTTTGTTTTAGCTCCTTTTGTAGTTTTA
ATTGCAATTAAAATTGGTCTTCCTTTTGAATTCAAAGACCCTTCAACTTATGGGATCTCAACTGCACTAGCCTCACTGAT
TCCGCCGATTTTTGTCTTTTCGATTACCTCAGTTGCAGGTTATGTTTTTCTTGTTCGAAATCAGGTAATTACCGTTTTAT
CTTCGGAATATATTTTAATTGCCAAAGCAAAAGGGCTATCAAAAATGGACATATTTTTTAAATATGTCCTTAAAAATGCA
GCAATTCCACTTGTAAGATCGCTAATTTTTTCTTATATAATTCTCCTTTCGGGATCAATTGTTTTAGAACAATTTTTTAG
AATTCCGGGGTCTTCAAGTATTTTAGTAAGTGCGGCTTTTGATGGTGAGGTTAATATTTCGATGTTTTCAATTATTTTCT
TTACCTCGCTTTCTTTAATCGTTGATATCATCGGTGATCTTGTCTATCTTTTCATGGATCCACGAATTAGTTTTGGGAAT
AAATCACCAATAAGTCTATGAGAAAAAATTAAAAATTGGAAAATTAGAAATTATCCAAGAAAGGAGAAAAATAATGCCTA
G

Upstream 100 bases:

>100_bases
ATGCAAACGATACTTATGATGCATTTACACCCCCAGATATGATTGTCATTAAACCTTTAAAAGAAAAATGGGAAAAAAAT
AATAAAAAAGGAGAAAAATA

Downstream 100 bases:

>100_bases
TTCAAAAGAATTTAGTCAGCGCTATAATCTAACAAAAGAGCAAATTAGTCTTTTAAAACCTGCAAGTTTTTCTGAGAAAA
ACTATATTTCAACCGGAAGA

Product: oligopeptide ABC transporter permease protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MALKYFFKRLLLALITFLAIYIIVFVLLANFSPDPFGDLVEKGSKVADQGKKLADLRAKYHFDQSTLARLWFYTAEVFKG
NFGPIYKTGEDGQIPSLFFGPLRYTILVSLPSFLISAFLGVILGTVAAYRRDRIEDAAISGISTFFVAIPSFVLAPFVVL
IAIKIGLPFEFKDPSTYGISTALASLIPPIFVFSITSVAGYVFLVRNQVITVLSSEYILIAKAKGLSKMDIFFKYVLKNA
AIPLVRSLIFSYIILLSGSIVLEQFFRIPGSSSILVSAAFDGEVNISMFSIIFFTSLSLIVDIIGDLVYLFMDPRISFGN
KSPISLWEKIKNWKIRNYPRKEKNNA

Sequences:

>Translated_346_residues
MALKYFFKRLLLALITFLAIYIIVFVLLANFSPDPFGDLVEKGSKVADQGKKLADLRAKYHFDQSTLARL*FYTAEVFKG
NFGPIYKTGEDGQIPSLFFGPLRYTILVSLPSFLISAFLGVILGTVAAYRRDRIEDAAISGISTFFVAIPSFVLAPFVVL
IAIKIGLPFEFKDPSTYGISTALASLIPPIFVFSITSVAGYVFLVRNQVITVLSSEYILIAKAKGLSKMDIFFKYVLKNA
AIPLVRSLIFSYIILLSGSIVLEQFFRIPGSSSILVSAAFDGEVNISMFSIIFFTSLSLIVDIIGDLVYLFMDPRISFGN
KSPISL*EKIKNWKIRNYPRKEKNNA
>Mature_345_residues
ALKYFFKRLLLALITFLAIYIIVFVLLANFSPDPFGDLVEKGSKVADQGKKLADLRAKYHFDQSTLARL*FYTAEVFKGN
FGPIYKTGEDGQIPSLFFGPLRYTILVSLPSFLISAFLGVILGTVAAYRRDRIEDAAISGISTFFVAIPSFVLAPFVVLI
AIKIGLPFEFKDPSTYGISTALASLIPPIFVFSITSVAGYVFLVRNQVITVLSSEYILIAKAKGLSKMDIFFKYVLKNAA
IPLVRSLIFSYIILLSGSIVLEQFFRIPGSSSILVSAAFDGEVNISMFSIIFFTSLSLIVDIIGDLVYLFMDPRISFGNK
SPISL*EKIKNWKIRNYPRKEKNNA

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=317, Percent_Identity=26.813880126183, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1789965, Length=341, Percent_Identity=23.4604105571848, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=25, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=25, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=22.3443223443223, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788504, Length=149, Percent_Identity=24.8322147651007, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38209; Mature: 38078

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALKYFFKRLLLALITFLAIYIIVFVLLANFSPDPFGDLVEKGSKVADQGKKLADLRAKY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHH
HFDQSTLARLFYTAEVFKGNFGPIYKTGEDGQIPSLFFGPLRYTILVSLPSFLISAFLGV
CCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ILGTVAAYRRDRIEDAAISGISTFFVAIPSFVLAPFVVLIAIKIGLPFEFKDPSTYGIST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHH
ALASLIPPIFVFSITSVAGYVFLVRNQVITVLSSEYILIAKAKGLSKMDIFFKYVLKNAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCH
IPLVRSLIFSYIILLSGSIVLEQFFRIPGSSSILVSAAFDGEVNISMFSIIFFTSLSLIV
HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
DIIGDLVYLFMDPRISFGNKSPISLEKIKNWKIRNYPRKEKNNA
HHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ALKYFFKRLLLALITFLAIYIIVFVLLANFSPDPFGDLVEKGSKVADQGKKLADLRAKY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHH
HFDQSTLARLFYTAEVFKGNFGPIYKTGEDGQIPSLFFGPLRYTILVSLPSFLISAFLGV
CCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ILGTVAAYRRDRIEDAAISGISTFFVAIPSFVLAPFVVLIAIKIGLPFEFKDPSTYGIST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHH
ALASLIPPIFVFSITSVAGYVFLVRNQVITVLSSEYILIAKAKGLSKMDIFFKYVLKNAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCH
IPLVRSLIFSYIILLSGSIVLEQFFRIPGSSSILVSAAFDGEVNISMFSIIFFTSLSLIV
HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
DIIGDLVYLFMDPRISFGNKSPISLEKIKNWKIRNYPRKEKNNA
HHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7569993 [H]