Click here to switch to the map view.

The map label for this gene is oppC

Identifier: 54020550

GI number: 54020550

Start: 628304

End: 629461

Strand: Reverse

Name: oppC

Synonym: mhp500

Alternate gene names: 54020550

Gene position: 629461-628304 (Counterclockwise)

Preceding gene: 54020551

Following gene: 54020549

Centisome position: 70.51

GC content: 30.22

Gene sequence:

>1158_bases
ATGCCTAGTTCAAAAGAATTTAGTCAGCGCTATAATCTAACAAAAGAGCAAATTAGTCTTTTAAAACCTGCAAGTTTTTC
TGAGAAAAACTATATTTCAACCGGAAGAATACTTGAGTTTTGAAAAGATGCAATTCTAAAATTTTTTCGCTCTAAAATTT
CGCTGATTTCAACAATTTTATTTTTATCGCTTTTAATTATTGCAATTTTTTCAGTAATTTTAAGTCCTTATAGTTCAACA
AAACCGATTTCACAAGCCGATCCTGTCCTTGTAAATGAACAACTTCCAAGTGGCTGAGGTCTTATAAAAACAACGGTATC
CACGGATATTTTAGAAAAAATTAGGTCAATTGAACTTGAAAATAAAATTCAACTTATTAAAGGAGATACAATTGAATTAT
TCCCAAATCGCTGGCAGATTCAAATAAATCCTTATCAGGTAATGTCAATTTTAGAAAATGGGAAAAAATTTGTCTCAATT
ATTGGAACCGATCAATATGGTAGGGATATTTGACTAAGAACTTGACAAGGAACTTTAAATGCTCTAGGAATTGCAATTAT
AATTGCTCTAATCCAATTTTTAATTGGAATTATTTTAGGTACCTACCTTGGATTTCATATTGGCACCTGAATTGATAATG
TGATTTTAAGAATTATTGATATTTTTGGATCAATTCCTTGAATTATTTTATTTATTATTTTTATTGCAATTTTTGGTCCT
AATACTCTCACTTTGATTCTACTTTTATCACTTACAGGTTGAACTAGACCGGCTTATCAGGCAAGATTATATACAATAAT
GGTCAAAGATGAAGAATATGTCTATGCTGCCAAAGTAATTGGGGCTTCAAAATTACGTCAGATTTACTATCATATTCTCC
CTAATATTTTCGGGAAATTATTATCTGTTTTTATTGCAAGTATTTTTGCTTCAATTACAACAGTTGCCGCGCTTGCTTTC
TTAGGATTTATTAAAGAAGGTCCTGATTCAAGTCCTAATTTAGGTCTTATTATTAATTCATCAGTCTCACTTGCTAATAA
AAATCCAATGGCGCTTTTATTACCTTCAATAATTTTAGTAATTCTTGCAGTTACTTCTCGATTTATTGCAAATGGAATCC
ATGATGTCCTTGATCCAAGAATTGGGGGAAGAAAATAA

Upstream 100 bases:

>100_bases
ATGGATCCACGAATTAGTTTTGGGAATAAATCACCAATAAGTCTATGAGAAAAAATTAAAAATTGGAAAATTAGAAATTA
TCCAAGAAAGGAGAAAAATA

Downstream 100 bases:

>100_bases
TGGAAAATCAGCAAAAAAAGCGGATTTTAGAAGTAAAAAATCTCCGAATTAGTTTTAAAACTGGAAAAAAAGAATATCTT
GAAGTAATCAGAGGAATCGA

Product: oligopeptide transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MPSSKEFSQRYNLTKEQISLLKPASFSEKNYISTGRILEFWKDAILKFFRSKISLISTILFLSLLIIAIFSVILSPYSST
KPISQADPVLVNEQLPSGWGLIKTTVSTDILEKIRSIELENKIQLIKGDTIELFPNRWQIQINPYQVMSILENGKKFVSI
IGTDQYGRDIWLRTWQGTLNALGIAIIIALIQFLIGIILGTYLGFHIGTWIDNVILRIIDIFGSIPWIILFIIFIAIFGP
NTLTLILLLSLTGWTRPAYQARLYTIMVKDEEYVYAAKVIGASKLRQIYYHILPNIFGKLLSVFIASIFASITTVAALAF
LGFIKEGPDSSPNLGLIINSSVSLANKNPMALLLPSIILVILAVTSRFIANGIHDVLDPRIGGRK

Sequences:

>Translated_385_residues
MPSSKEFSQRYNLTKEQISLLKPASFSEKNYISTGRILEF*KDAILKFFRSKISLISTILFLSLLIIAIFSVILSPYSST
KPISQADPVLVNEQLPSG*GLIKTTVSTDILEKIRSIELENKIQLIKGDTIELFPNRWQIQINPYQVMSILENGKKFVSI
IGTDQYGRDI*LRT*QGTLNALGIAIIIALIQFLIGIILGTYLGFHIGT*IDNVILRIIDIFGSIP*IILFIIFIAIFGP
NTLTLILLLSLTG*TRPAYQARLYTIMVKDEEYVYAAKVIGASKLRQIYYHILPNIFGKLLSVFIASIFASITTVAALAF
LGFIKEGPDSSPNLGLIINSSVSLANKNPMALLLPSIILVILAVTSRFIANGIHDVLDPRIGGRK
>Mature_384_residues
PSSKEFSQRYNLTKEQISLLKPASFSEKNYISTGRILEF*KDAILKFFRSKISLISTILFLSLLIIAIFSVILSPYSSTK
PISQADPVLVNEQLPSG*GLIKTTVSTDILEKIRSIELENKIQLIKGDTIELFPNRWQIQINPYQVMSILENGKKFVSII
GTDQYGRDI*LRT*QGTLNALGIAIIIALIQFLIGIILGTYLGFHIGT*IDNVILRIIDIFGSIP*IILFIIFIAIFGPN
TLTLILLLSLTG*TRPAYQARLYTIMVKDEEYVYAAKVIGASKLRQIYYHILPNIFGKLLSVFIASIFASITTVAALAFL
GFIKEGPDSSPNLGLIINSSVSLANKNPMALLLPSIILVILAVTSRFIANGIHDVLDPRIGGRK

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=253, Percent_Identity=28.8537549407115, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787760, Length=224, Percent_Identity=29.9107142857143, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1789964, Length=230, Percent_Identity=26.9565217391304, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787549, Length=214, Percent_Identity=28.5046728971963, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1789889, Length=222, Percent_Identity=25.2252252252252, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1788505, Length=228, Percent_Identity=27.6315789473684, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787498, Length=229, Percent_Identity=29.6943231441048, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 41647; Mature: 41516

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSSKEFSQRYNLTKEQISLLKPASFSEKNYISTGRILEFKDAILKFFRSKISLISTILF
CCCCHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LSLLIIAIFSVILSPYSSTKPISQADPVLVNEQLPSGGLIKTTVSTDILEKIRSIELENK
HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEHHHHHHHHHHHHCCCCCC
IQLIKGDTIELFPNRWQIQINPYQVMSILENGKKFVSIIGTDQYGRDILRTQGTLNALGI
EEEEECCEEEECCCCEEEEECHHHHHHHHHCCHHEEEEECCCHHHHHHHHHCCCHHHHHH
AIIIALIQFLIGIILGTYLGFHIGTIDNVILRIIDIFGSIPIILFIIFIAIFGPNTLTLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHH
LLLSLTGTRPAYQARLYTIMVKDEEYVYAAKVIGASKLRQIYYHILPNIFGKLLSVFIAS
HHHHHCCCCCHHHEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFASITTVAALAFLGFIKEGPDSSPNLGLIINSSVSLANKNPMALLLPSIILVILAVTSR
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
FIANGIHDVLDPRIGGRK
HHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
PSSKEFSQRYNLTKEQISLLKPASFSEKNYISTGRILEFKDAILKFFRSKISLISTILF
CCCHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LSLLIIAIFSVILSPYSSTKPISQADPVLVNEQLPSGGLIKTTVSTDILEKIRSIELENK
HHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEHHHHHHHHHHHHCCCCCC
IQLIKGDTIELFPNRWQIQINPYQVMSILENGKKFVSIIGTDQYGRDILRTQGTLNALGI
EEEEECCEEEECCCCEEEEECHHHHHHHHHCCHHEEEEECCCHHHHHHHHHCCCHHHHHH
AIIIALIQFLIGIILGTYLGFHIGTIDNVILRIIDIFGSIPIILFIIFIAIFGPNTLTLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHH
LLLSLTGTRPAYQARLYTIMVKDEEYVYAAKVIGASKLRQIYYHILPNIFGKLLSVFIAS
HHHHHCCCCCHHHEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFASITTVAALAFLGFIKEGPDSSPNLGLIINSSVSLANKNPMALLLPSIILVILAVTSR
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
FIANGIHDVLDPRIGGRK
HHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7569993 [H]