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The map label for this gene is ybjZ [C]

Identifier: 54020518

GI number: 54020518

Start: 554796

End: 555365

Strand: Reverse

Name: ybjZ [C]

Synonym: mhp451

Alternate gene names: 54020518

Gene position: 555365-554796 (Counterclockwise)

Preceding gene: 54020519

Following gene: 54020517

Centisome position: 62.21

GC content: 36.49

Gene sequence:

>570_bases
ATGTCAGGACTAGATCGGGCAACTGAAGGGGAAATTATCGTTGATTCAGTCAATCTTGCCTATCTTAAAAATGGAGAACT
TACCAAATTTAGGCGCCAAAATGTCTCTTTTATTTTTCAGTCTTATAACCTTTTGGGAAATATTAACGGTTATGATAATG
TCCAAGTTGGCGCCTATCTTCAAAAGGATAAATCAAAAGTGCTTGATATTGAGCAACTTTTTGCCGAATTTGAACTTGAT
GATATCAAGTTCAAATTCCCATCGCAGATGTCTGGGGGACAGCAACAAAGAATCTCGATTCTCCGTGCTCTTGTTAAAAA
TGCCAAAGTAATTTTTGCTGATGAACCTACTGGCGCCCTTGATGAAACTAATACCAATATTGTCTTACGCGCCTTAAAAT
ATATCAACAAAAAATACAAAACCACAATCGTTATGGTCTCACATGATCCAGCAATGGAGGCCCTAGCCGATTTAATTATC
AAGCTTAAAAACGGAAAATTGACGACAAAACGACATAAATCCCTTAGTTTTGAAGAGTTTTTAGCCCAAAAAGCAAAAAA
TTCCCAATAA

Upstream 100 bases:

>100_bases
TACCAAAGTTTTTGCGGATATTAATTTTAGTATTGCCGCTGGTGATTTTGCAATTCTTAGTGGAAAATCAGGATCGGGAA
AGTCAACAATTCTCAACTTA

Downstream 100 bases:

>100_bases
AATCCTGCGCAAAAATTTTTTCTAAAAAATTTTTTCATTTTTTTAAAAAAAATGGTATAATATAATGAAAATTTGAAGGG
AAGTAAATGTTATCAGCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSGLDRATEGEIIVDSVNLAYLKNGELTKFRRQNVSFIFQSYNLLGNINGYDNVQVGAYLQKDKSKVLDIEQLFAEFELD
DIKFKFPSQMSGGQQQRISILRALVKNAKVIFADEPTGALDETNTNIVLRALKYINKKYKTTIVMVSHDPAMEALADLII
KLKNGKLTTKRHKSLSFEEFLAQKAKNSQ

Sequences:

>Translated_189_residues
MSGLDRATEGEIIVDSVNLAYLKNGELTKFRRQNVSFIFQSYNLLGNINGYDNVQVGAYLQKDKSKVLDIEQLFAEFELD
DIKFKFPSQMSGGQQQRISILRALVKNAKVIFADEPTGALDETNTNIVLRALKYINKKYKTTIVMVSHDPAMEALADLII
KLKNGKLTTKRHKSLSFEEFLAQKAKNSQ
>Mature_188_residues
SGLDRATEGEIIVDSVNLAYLKNGELTKFRRQNVSFIFQSYNLLGNINGYDNVQVGAYLQKDKSKVLDIEQLFAEFELDD
IKFKFPSQMSGGQQQRISILRALVKNAKVIFADEPTGALDETNTNIVLRALKYINKKYKTTIVMVSHDPAMEALADLIIK
LKNGKLTTKRHKSLSFEEFLAQKAKNSQ

Specific function: Unknown

COG id: COG1136

COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI148612844, Length=83, Percent_Identity=49.3975903614458, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI255708477, Length=83, Percent_Identity=49.3975903614458, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI1787105, Length=166, Percent_Identity=37.9518072289157, Blast_Score=117, Evalue=5e-28,
Organism=Escherichia coli, GI1786398, Length=168, Percent_Identity=38.6904761904762, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1786703, Length=174, Percent_Identity=35.0574712643678, Blast_Score=107, Evalue=4e-25,
Organism=Escherichia coli, GI87081834, Length=172, Percent_Identity=29.6511627906977, Blast_Score=99, Evalue=1e-22,
Organism=Escherichia coli, GI1789873, Length=157, Percent_Identity=36.3057324840764, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1789032, Length=168, Percent_Identity=29.7619047619048, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788761, Length=175, Percent_Identity=28, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1788225, Length=164, Percent_Identity=31.7073170731707, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI1788644, Length=178, Percent_Identity=30.3370786516854, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786872, Length=190, Percent_Identity=29.4736842105263, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI1787029, Length=191, Percent_Identity=30.3664921465969, Blast_Score=77, Evalue=6e-16,
Organism=Escherichia coli, GI1787370, Length=173, Percent_Identity=30.0578034682081, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788450, Length=121, Percent_Identity=33.0578512396694, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790544, Length=151, Percent_Identity=31.7880794701987, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI87081791, Length=153, Percent_Identity=28.7581699346405, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788506, Length=168, Percent_Identity=30.3571428571429, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1789672, Length=186, Percent_Identity=29.0322580645161, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI87081709, Length=173, Percent_Identity=27.1676300578035, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787089, Length=160, Percent_Identity=28.125, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1787712, Length=142, Percent_Identity=33.0985915492958, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI48994883, Length=142, Percent_Identity=32.3943661971831, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87082267, Length=152, Percent_Identity=26.9736842105263, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1786253, Length=151, Percent_Identity=25.1655629139073, Blast_Score=67, Evalue=5e-13,
Organism=Escherichia coli, GI1790467, Length=172, Percent_Identity=28.4883720930233, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1787164, Length=168, Percent_Identity=25.5952380952381, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1786698, Length=178, Percent_Identity=29.7752808988764, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1789962, Length=189, Percent_Identity=29.1005291005291, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=173, Percent_Identity=31.7919075144509, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=173, Percent_Identity=31.7919075144509, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=178, Percent_Identity=32.0224719101124, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=89, Percent_Identity=44.9438202247191, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=173, Percent_Identity=31.7919075144509, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=170, Percent_Identity=32.9411764705882, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI25146777, Length=170, Percent_Identity=31.1764705882353, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 21367; Mature: 21236

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGLDRATEGEIIVDSVNLAYLKNGELTKFRRQNVSFIFQSYNLLGNINGYDNVQVGAYL
CCCCCCCCCCCEEEEECEEEEEECCCHHHHHHHHHHHHEEHHHHEECCCCCCCEEECCEE
QKDKSKVLDIEQLFAEFELDDIKFKFPSQMSGGQQQRISILRALVKNAKVIFADEPTGAL
CCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCC
DETNTNIVLRALKYINKKYKTTIVMVSHDPAMEALADLIIKLKNGKLTTKRHKSLSFEEF
CCCCHHHHHHHHHHHCHHHEEEEEEEECCHHHHHHHHHHHHHCCCCEECHHHHCCCHHHH
LAQKAKNSQ
HHHHHCCCC
>Mature Secondary Structure 
SGLDRATEGEIIVDSVNLAYLKNGELTKFRRQNVSFIFQSYNLLGNINGYDNVQVGAYL
CCCCCCCCCCEEEEECEEEEEECCCHHHHHHHHHHHHEEHHHHEECCCCCCCEEECCEE
QKDKSKVLDIEQLFAEFELDDIKFKFPSQMSGGQQQRISILRALVKNAKVIFADEPTGAL
CCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCC
DETNTNIVLRALKYINKKYKTTIVMVSHDPAMEALADLIIKLKNGKLTTKRHKSLSFEEF
CCCCHHHHHHHHHHHCHHHEEEEEEEECCHHHHHHHHHHHHHCCCCEECHHHHCCCHHHH
LAQKAKNSQ
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7569993; 8253680 [H]