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The map label for this gene is rpsT

Identifier: 54020357

GI number: 54020357

Start: 161043

End: 161315

Strand: Reverse

Name: rpsT

Synonym: mhp135

Alternate gene names: 54020357

Gene position: 161315-161043 (Counterclockwise)

Preceding gene: 54020358

Following gene: 54020356

Centisome position: 18.07

GC content: 30.77

Gene sequence:

>273_bases
ATGGCAAATATTAAGTCAAAAATTAAGTCAATTACAAAAATGCAGAAGGCTCGCGCAAGAAATAATGCAATTAAATCCCG
TGTAAAAACAGCGATCAAAAAAGCGAAAATTGCCATAAGTACTGATGCATCTAATAAATCAGATTTGATAGCAAAAGCAC
ATTCAGAAATTTCAAAAGCAAAATCAAAAGGTGTTTTTCATAAAAATAAAGCAAACAGAAAGATTTCAAGACTAAATCTT
TTTGCGAATACTTACACAACACCAGCTCAGTAA

Upstream 100 bases:

>100_bases
GTATTTTATTGTATAATTTAATATATAATAGTTATTAACTAAAATTATTTTGTTTGTCAAAAAAAAAAAAAAAAAAAAAA
CCGAAAAAGGAAAAAAAAGA

Downstream 100 bases:

>100_bases
TTAAATTTTTTTAGTAATTTTATTTTTTGGTAAAAAATTTAAAGAATATTACCAACAAGGTAATGTTTTTTAATTTACTA
ATAGATGATGCTGACAACTG

Product: 30S ribosomal protein S20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 89

Protein sequence:

>90_residues
MANIKSKIKSITKMQKARARNNAIKSRVKTAIKKAKIAISTDASNKSDLIAKAHSEISKAKSKGVFHKNKANRKISRLNL
FANTYTTPAQ

Sequences:

>Translated_90_residues
MANIKSKIKSITKMQKARARNNAIKSRVKTAIKKAKIAISTDASNKSDLIAKAHSEISKAKSKGVFHKNKANRKISRLNL
FANTYTTPAQ
>Mature_89_residues
ANIKSKIKSITKMQKARARNNAIKSRVKTAIKKAKIAISTDASNKSDLIAKAHSEISKAKSKGVFHKNKANRKISRLNLF
ANTYTTPAQ

Specific function: Binds directly to 16S ribosomal RNA

COG id: COG0268

COG function: function code J; Ribosomal protein S20

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S20P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS20_MYCH2 (Q601R6)

Other databases:

- EMBL:   AE017332
- RefSeq:   YP_115649.1
- ProteinModelPortal:   Q601R6
- SMR:   Q601R6
- STRING:   Q601R6
- GeneID:   3105365
- GenomeReviews:   AE017332_GR
- KEGG:   mhy:mhp135
- eggNOG:   COG0268
- HOGENOM:   HBG734145
- OMA:   AFEANPT
- ProtClustDB:   PRK00239
- BioCyc:   MHYO295358:MHP135-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00500
- InterPro:   IPR002583
- Gene3D:   G3DSA:1.20.58.110
- ProDom:   PD004231

Pfam domain/function: PF01649 Ribosomal_S20p; SSF46992 Ribosomal_S20p

EC number: NA

Molecular weight: Translated: 9925; Mature: 9794

Theoretical pI: Translated: 11.97; Mature: 11.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANIKSKIKSITKMQKARARNNAIKSRVKTAIKKAKIAISTDASNKSDLIAKAHSEISKA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHH
KSKGVFHKNKANRKISRLNLFANTYTTPAQ
HHCCCCCCCCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
ANIKSKIKSITKMQKARARNNAIKSRVKTAIKKAKIAISTDASNKSDLIAKAHSEISKA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHH
KSKGVFHKNKANRKISRLNLFANTYTTPAQ
HHCCCCCCCCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA