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The map label for this gene is rplW

Identifier: 54020072

GI number: 54020072

Start: 230485

End: 230988

Strand: Direct

Name: rplW

Synonym: mhp189

Alternate gene names: 54020072

Gene position: 230485-230988 (Clockwise)

Preceding gene: 54020071

Following gene: 54020073

Centisome position: 25.82

GC content: 28.77

Gene sequence:

>504_bases
ATGAATGTAAATGAAATAATAAAAGGTCCAATTTTAACTGAAAAATCTTATCAATTAATGTCTAGTGGCGTTTATTCTTT
TAAAGTTAGTCCAAAAACTAACCGTTCTGAGACAAAAAAAGCAGTTGAATACATTTTTAATGTAAAAGTTGAAAAGGTAA
ATATTTTTACTGTCCCAAAAAAAGAAAAAAAACTAGGAAAATCAAAAGGGTTTACTACCAAATATAAAAAGGCGCTTGTA
AAATTGATGCCCGGTTATACAATTAATCTTTTTGAAGACGAAAGTCCTCAAGATCAAAAAGATTCTGAAACTGTAAGCGA
AAATACTGAAGAAAAAGCAAAAATTGCCAAGAAAAAAGCCGAATTAGAGGCTAAAAACAAAGAGATTGCAGAGAAATTAG
CTAAAAAACAAGCCGAATTAGCAAAAAAAGAGTCTGAAACTAACGAAAATCAAGAAAAAAAGATTGAAAATCAAACCGAA
AACCAGGAAAATAGTGCTAAATAA

Upstream 100 bases:

>100_bases
GGTAAAAACGAATTCGCTAACAGTTGAATCACTAATTAAGGCCGATTTGTTAATAATTTCCAAAAATGAAATTACTAATT
TGGAGAAGAGAATCTAAAAA

Downstream 100 bases:

>100_bases
GGCCGAGCCGGAAAATATTTCAAAGAAAAAAACGCAAAAACTAAAAAAGACCAAAAAAATGTCTAGTTTAGTGCTCGGGA
AAATAAAGACAAAAAAATCT

Product: 50S ribosomal protein L23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MNVNEIIKGPILTEKSYQLMSSGVYSFKVSPKTNRSETKKAVEYIFNVKVEKVNIFTVPKKEKKLGKSKGFTTKYKKALV
KLMPGYTINLFEDESPQDQKDSETVSENTEEKAKIAKKKAELEAKNKEIAEKLAKKQAELAKKESETNENQEKKIENQTE
NQENSAK

Sequences:

>Translated_167_residues
MNVNEIIKGPILTEKSYQLMSSGVYSFKVSPKTNRSETKKAVEYIFNVKVEKVNIFTVPKKEKKLGKSKGFTTKYKKALV
KLMPGYTINLFEDESPQDQKDSETVSENTEEKAKIAKKKAELEAKNKEIAEKLAKKQAELAKKESETNENQEKKIENQTE
NQENSAK
>Mature_167_residues
MNVNEIIKGPILTEKSYQLMSSGVYSFKVSPKTNRSETKKAVEYIFNVKVEKVNIFTVPKKEKKLGKSKGFTTKYKKALV
KLMPGYTINLFEDESPQDQKDSETVSENTEEKAKIAKKKAELEAKNKEIAEKLAKKQAELAKKESETNENQEKKIENQTE
NQENSAK

Specific function: One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome

COG id: COG0089

COG function: function code J; Ribosomal protein L23

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L23P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL23_MYCH2 (Q601L3)

Other databases:

- EMBL:   AE017332
- RefSeq:   YP_115702.1
- HSSP:   Q9RA57
- ProteinModelPortal:   Q601L3
- SMR:   Q601L3
- STRING:   Q601L3
- GeneID:   3105479
- GenomeReviews:   AE017332_GR
- KEGG:   mhy:mhp189
- eggNOG:   COG0089
- HOGENOM:   HBG439330
- OMA:   SETNENQ
- ProtClustDB:   PRK12280
- BioCyc:   MHYO295358:MHP189-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01369_B
- InterPro:   IPR012677
- InterPro:   IPR012678
- InterPro:   IPR013025
- Gene3D:   G3DSA:3.30.70.330

Pfam domain/function: PF00276 Ribosomal_L23; SSF54189 L23_L15e_core

EC number: NA

Molecular weight: Translated: 19040; Mature: 19040

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS00050 RIBOSOMAL_L23

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVNEIIKGPILTEKSYQLMSSGVYSFKVSPKTNRSETKKAVEYIFNVKVEKVNIFTVPK
CCHHHHHCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCEEEEEEEEECCC
KEKKLGKSKGFTTKYKKALVKLMPGYTINLFEDESPQDQKDSETVSENTEEKAKIAKKKA
HHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHH
ELEAKNKEIAEKLAKKQAELAKKESETNENQEKKIENQTENQENSAK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNVNEIIKGPILTEKSYQLMSSGVYSFKVSPKTNRSETKKAVEYIFNVKVEKVNIFTVPK
CCHHHHHCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCEEEEEEEEECCC
KEKKLGKSKGFTTKYKKALVKLMPGYTINLFEDESPQDQKDSETVSENTEEKAKIAKKKA
HHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHCCHHHHHHHHHHHH
ELEAKNKEIAEKLAKKQAELAKKESETNENQEKKIENQTENQENSAK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA