Click here to switch to the map view.

The map label for this gene is vacB

Identifier: 53723480

GI number:

Start: 1312731

End: 1315169

Strand: Reverse

Name: vacB

Synonym: BMA1263

Alternate gene names: NA

Gene position: NA

Preceding gene: 53723481

Following gene: 53723479

Centisome position: NA

GC content: NA

Gene sequence:

>2439_bases
TTGAGCAAGTATCCGTATCCCATCCCGAGCCGCGAAGAGATTCTCGGCGTGCTGCGCACGAGCGACGCGCCGCTTGCGGC
GAACGACATCGCCGAAGCGCTGTCGATCAAGCGTCAGGAGCGCGAGGGATTTTTCCGGCGCGTCGCCGCGATGGAGCGCG
ACGGCCAGATCCGTCTCGACAAGCGCGGTCATTATCAGCTGACGCATCCGTCCAACTTCGTCGCGGGCCGCGTGCAAGGC
CACCGCGACGGCTACGGCTTCGTGATTCGCGACGACGGGCAGGATGATCTGTTCCTGCCGAACGCCGAGATGCAAAAGGT
CATGCACAACGACCGCGTGCTGGCGCGGATCGTCGGCTACGATCGGCGCGGCCGGCCGGAAGGGCACGTCGTCGAGGTGA
CCGAGCGGGCGAACAAGCGCGTGATCGGGCGCCTCCTGAACGAGAACGGCGCGCTCATCGTCGCGCCCGAGGACAAGCGG
ATCAGTCACGACATCCTCGTCACGCAGAACGCGAAGAAGGCGAAGGTCGGGCAGGTCGTCGTCGTCGAGCTCACCGATTT
CCCGAGCCGTCATTCGCAGCCGCTCGGCCGCGTCTGCGAGGTGCTCGGCGATATCGACGATCCCGGCATGGAGATCGAGA
TCGCGGTGCGCAAGTACGGCGTGCCGCACGAATTCGGCGCGCAAGCGCTCGGCGAGGCCGCGGCGCTGCCGGACAAGGTG
CGGCCCGCGGATCTGCGCTACCGCGTCGACTTGCGCGACGTGCCGCTCGTCACGATCGACGGCGAGGACGCGCGCGACTT
CGACGACGCCGTGTACTGCGAGCCCGCCGCGGTCGGCCGCGGCGAGGGCTTCCGGCTCATCGTCGCGATCGCGGACGTGT
CGCACTACGTGCAGCCAGGCAGCCCGCTCGACGCCGACGCGGTCGAACGCAGCACGTCGGTCTATTTCCCGCGCCGGGTG
ATTCCGATGCTGCCGGAGAAGCTGTCGAACGGGCTCTGCTCGCTGAATCCGCAGGTCGATCGCTGCGTGCTCGCGTGCGA
CATGATCATCAACGCGCGTGGCGACATCAAGGCGTATCAGTTCTATCCGGCCGTGATCCACTCGGCCGCGCGGCTCACGT
ACACCGAAGTGGCCGCGGTGCTCTCGAACACGAAGGGGCCGGAGGCCGCGCGCCGCGCCGAGCTGATGCCGCACCTGCAG
CACCTGTACGGCGTCTACAAGGCGCTCTTCGTCGCGCGGCAGAAGCGCGGCGCGATCGACTTCGACACGACCGAGACGTA
CATCGTCTGCAACGCACAGGGCAAGATCGAGCAGATTCTGCCGCGCCAGCGTAACGACGCGCATCGGCTGATCGAGGAAT
GCATGCTTGCCGCGAACGTCTGCGCGGCCGATTTCCTCAAGCGCAACAAGCACCCGGGCCTCTACCGCGTGCACGCGGGG
CCGACGCCCGAAAAGCTCGAGAATCTGCGCGCGTTCCTGCGCGACATGGGGCTCACGCTGGGCGGCGGCGACACGCCGCA
TGCGAGCGATTACGCGGCGCTGATGGCGCACATCCGCGACCGGCCCGACGCGCAGATGCTGCAGCCGATGCTGCTGCGCT
CGATGCAGCAGGCGGTCTACAGTCCGGACAACATCGGCCACTTCGGTCTCGCGTACGACGCGTACGCGCACTTCACGAGC
CCGATTCGCCGCTATCCCGATCTGCTCACGCACCGCGCGATCTACGCGATCCTGTCCGGCAAGAAGTACACGCCGAAGTC
GCCGGAAGGCGTCGAGCTGAACACCGCGCTGTCGCCGCGCGCGCGCGCGATGCAGCGCGAGGACGACGAGGCGCGCGGCC
GCGCGCGGTCGAACGCGGCGATCTGGGAGGAGCTCGGGCTGCACTGTTCGTCCAACGAGCGGCGCGCGGACGAAGCGTCG
CGCGACGTCGAGGCATGGCTCAAGTGCTATTTCATGCGCGACAAGCTCGGCGAGGAATACGGCGGGATGGTGAACGGCGT
CACGTCGTTCGGCATCTTCGTGCAGCTCGATGCGCTTTTCATCGAAGGCCTCGTGCATGTGACCGAGCTCGGCGCCGATT
ATTTTCAGTACGACGAAGTCAAGAACGAACTGCGCGGCGAGCGCACGGGCATTCGCTACCGGCTGTCCGACCGCGTGCGC
GTGCAGGTGAGCCGCGTCGATCTCGATGCGCGCAAGATCGATTTCCGCCTCGTGCGCGAGACGCCCGTGAAGGCGCCGCG
CCCGGCATCGGCGGTGGCGGCCGAAGCGGGCGCGGGCGGGCCGCGTGTGCGCGCGCTGCCGCCCGCCGAAGGCGCCGCGC
GACGCAAGAAGGCCGCGAGCGCGCCGAGCGCGGCGGTGAAGGAGGCCCGGGCGGCCCGCAAGAAGGGCGCCGCGTCGAAG
CCGGCCGCGAAGAAGGCGCGTTCGCGCAAGAAGTACTGA

Upstream 100 bases:

>100_bases
GCGGGTGTTAGAATGGGGCGGCATGAGCGGCGCGCCCGTTCGGCTCCGCTTGCCGCGGTCGCGCAAGCCAAACGCAACGA
GAAAAATCATCGACAAGCCC

Downstream 100 bases:

>100_bases
TCGAGCGCGTCGCCGATCCGGCGGCGCCGACCGAAACGCCGCGCGCCCCGCCAGGGCGCGCGGCGCTTTCCGTTTTCCAT
GCGGCGCGTGCGATGCGCGG

Product: ribonuclease R

Products: NA

Alternate protein names: NA

Number of amino acids: NA

Protein sequence:

>812_residues
MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLDKRGHYQLTHPSNFVAGRVQG
HRDGYGFVIRDDGQDDLFLPNAEMQKVMHNDRVLARIVGYDRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKR
ISHDILVTQNAKKAKVGQVVVVELTDFPSRHSQPLGRVCEVLGDIDDPGMEIEIAVRKYGVPHEFGAQALGEAAALPDKV
RPADLRYRVDLRDVPLVTIDGEDARDFDDAVYCEPAAVGRGEGFRLIVAIADVSHYVQPGSPLDADAVERSTSVYFPRRV
IPMLPEKLSNGLCSLNPQVDRCVLACDMIINARGDIKAYQFYPAVIHSAARLTYTEVAAVLSNTKGPEAARRAELMPHLQ
HLYGVYKALFVARQKRGAIDFDTTETYIVCNAQGKIEQILPRQRNDAHRLIEECMLAANVCAADFLKRNKHPGLYRVHAG
PTPEKLENLRAFLRDMGLTLGGGDTPHASDYAALMAHIRDRPDAQMLQPMLLRSMQQAVYSPDNIGHFGLAYDAYAHFTS
PIRRYPDLLTHRAIYAILSGKKYTPKSPEGVELNTALSPRARAMQREDDEARGRARSNAAIWEELGLHCSSNERRADEAS
RDVEAWLKCYFMRDKLGEEYGGMVNGVTSFGIFVQLDALFIEGLVHVTELGADYFQYDEVKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRETPVKAPRPASAVAAEAGAGGPRVRALPPAEGAARRKKAASAPSAAVKEARAARKKGAASK
PAAKKARSRKKY

Sequences:
NA

Specific function: NA

COG id: COG0557

COG function: function code K; Exoribonuclease R

Gene ontology:

Cell location: NA

Metaboloic importance: NA

Operon status: NA

Operon components: NA

Similarity: NA

Homologues:

NA

Paralogues:

NA

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: NA

Theoretical pI: NA

Prosite motif: NA

Important sites: NA

Signals:

NA

Transmembrane regions:

NA

Cys/Met content:

NA

Secondary structure: NA

PDB accession: NA

Resolution: NA

Structure class: NA

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: NA

TargetDB status: NA

Availability: NA

References: NA