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The map label for this gene is sigV [H]

Identifier: 52787848

GI number: 52787848

Start: 3999633

End: 4000202

Strand: Reverse

Name: sigV [H]

Synonym: BLi04171

Alternate gene names: 52787848

Gene position: 4000202-3999633 (Counterclockwise)

Preceding gene: 52787849

Following gene: 52787847

Centisome position: 94.73

GC content: 44.04

Gene sequence:

>570_bases
ATGTTTGAAGGAGGCGCAGCAGTGAAGCAAATCAGATTAGTTAAGAAAGCTGTCGCAGGCAACGCCAAAGCTTTTGAAAT
GCTGTTTCAAAAGCACAGCGAACAGCTTTACAGAACAGCTTACATATATGTGCGAAATAAGGAGGACGCGTTAGATATCG
TACAGGAAACGGCGTACAAGGCATTTTTATCGATTGCCCAGTTGAGGAATCCCGAATACTTTTTGACATGGCTGACGAAA
ATCCTCATTCATCATGCATATGCCATATTGGACAAGAAAAAGAAAGTGGTTTTAATGGACAGGCCGCTGCAGGACGAAGG
CCGGGAGCAGGAGATGCATGCGGACGACAGAATAGGGATGCTTGAAGCTGTTCAGCAGTTGCGAAAAGAATATCAAACCG
CCATCATTTTATTTTATTATCACGACCTGCCGATTCATGATATCGCCGAGGTGATGAATGCTCCTGAAGGAACCGTTAAG
ACCTATCTGAAAAGAGCGAAGCTTGAATTAAAACAACTACTGACTGGGGGAGAAGACGCATGGACAAACAACGGTTCAAA
AACGAAGTAA

Upstream 100 bases:

>100_bases
AACAGAAACTAACATTTGAACCCGCTATATTACCTAAAGCGGGTTTTTTATGTGAAAAAAACCATCTTTCTGAAACTTTT
CTCATCATTTCTCCTCTCTA

Downstream 100 bases:

>100_bases
ACAAGATCGATGTCCCTACAAAAGAAATCCGCGAATCGATTGATAAAGGCATCAAGCGGGCCAAGCGGGAAAAAACGTTT
CGGCCGAAGCGCGCCGTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MFEGGAAVKQIRLVKKAVAGNAKAFEMLFQKHSEQLYRTAYIYVRNKEDALDIVQETAYKAFLSIAQLRNPEYFLTWLTK
ILIHHAYAILDKKKKVVLMDRPLQDEGREQEMHADDRIGMLEAVQQLRKEYQTAIILFYYHDLPIHDIAEVMNAPEGTVK
TYLKRAKLELKQLLTGGEDAWTNNGSKTK

Sequences:

>Translated_189_residues
MFEGGAAVKQIRLVKKAVAGNAKAFEMLFQKHSEQLYRTAYIYVRNKEDALDIVQETAYKAFLSIAQLRNPEYFLTWLTK
ILIHHAYAILDKKKKVVLMDRPLQDEGREQEMHADDRIGMLEAVQQLRKEYQTAIILFYYHDLPIHDIAEVMNAPEGTVK
TYLKRAKLELKQLLTGGEDAWTNNGSKTK
>Mature_189_residues
MFEGGAAVKQIRLVKKAVAGNAKAFEMLFQKHSEQLYRTAYIYVRNKEDALDIVQETAYKAFLSIAQLRNPEYFLTWLTK
ILIHHAYAILDKKKKVVLMDRPLQDEGREQEMHADDRIGMLEAVQQLRKEYQTAIILFYYHDLPIHDIAEVMNAPEGTVK
TYLKRAKLELKQLLTGGEDAWTNNGSKTK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Positively regulates the expression of proteins involved in stress responses against bacitracin, paraquat and tellurite

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21860; Mature: 21860

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEGGAAVKQIRLVKKAVAGNAKAFEMLFQKHSEQLYRTAYIYVRNKEDALDIVQETAYK
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHH
AFLSIAQLRNPEYFLTWLTKILIHHAYAILDKKKKVVLMDRPLQDEGREQEMHADDRIGM
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHCCCCCCCH
LEAVQQLRKEYQTAIILFYYHDLPIHDIAEVMNAPEGTVKTYLKRAKLELKQLLTGGEDA
HHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
WTNNGSKTK
CCCCCCCCC
>Mature Secondary Structure
MFEGGAAVKQIRLVKKAVAGNAKAFEMLFQKHSEQLYRTAYIYVRNKEDALDIVQETAYK
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHH
AFLSIAQLRNPEYFLTWLTKILIHHAYAILDKKKKVVLMDRPLQDEGREQEMHADDRIGM
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHCCCCCCCH
LEAVQQLRKEYQTAIILFYYHDLPIHDIAEVMNAPEGTVKTYLKRAKLELKQLLTGGEDA
HHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
WTNNGSKTK
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]