BacMap

Definition	Bacillus licheniformis ATCC 14580, complete genome.
Accession	NC_006322
Length	4,222,645

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The map label for this gene is ydbJ [H]

Identifier: 52787797

GI number: 52787797

Start: 3941135

End: 3941770

Strand: Reverse

Name: ydbJ [H]

Synonym: BLi04120

Alternate gene names: 52787797

Gene position: 3941770-3941135 (Counterclockwise)

Preceding gene: 52787798

Following gene: 52787796

Centisome position: 93.35

GC content: 45.75

Gene sequence:

>636_bases
ATGGTTGAGCTTCCAATTGTCATGAACCATGTTGAGGTGCGGGCGGGAGACAGGAAACTTCTTGAAAACGTCAGCCTTGC
TGTGGACAAAGGGAGCCGGGTTTTGCTCAAAGGAGAAAACGGATCGGGAAAATCGACGTTTCTTAAAGCAATTACCGGCT
TGTCTTTATTTGCGGGCGAAATTTTGATTTACGGTCAATCGATTATCCAAAACAGGGAAGCTGCTGTCGGGCATATCGGC
TATGTCAGTGACGAAGTGCCGCTTCATGAGCACCTTACTGGAACGGACAATCTGAGAGTCCATGCCTTGCTTCACGGAAT
AGATGACGATGACCGGATCTATTCTGAACTAGAGCGGTTCGGTATCAATCCGGCTGATGACACGAAAGTACAGTACTATT
CAACAGGCATGAGGCAAAAGCTGAAGATCGCAATGGCCTTATTTCATCAGCCTTCCATCTTAATATTGGATGAGCCTTTA
AATGGGCTCGACCGAAAAGCGCAGGAAAGCGTTGTAGACATCATAAGGCGGTATGACGGGACCATCATGGCATCAAGCCA
TTGGAACGAAACTTTTATCGAATTGTTTGATCGTTTTCTAGCCATAGAAAGCGGGCGTTTAAATGAAATTGTTTAA

Upstream 100 bases:

>100_bases
TGTCGTTCGCCAATTATAAAAACATGGTCACACTGGCTTTTTCGCTGCCGTATTTCATTGGATTCTTCATTTTGTTGGGA
ATTCGTTCAAGGGTGTAGCC

Downstream 100 bases:

>100_bases
AGTTTATTTTTGGTTAAGCTGTCCCGAAGCGGTGAAAAAGAGAATGAAATTTCAGACGTTTGCATGTACGGTTATGATCA
TCACGGTGCTCGCCGTTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MVELPIVMNHVEVRAGDRKLLENVSLAVDKGSRVLLKGENGSGKSTFLKAITGLSLFAGEILIYGQSIIQNREAAVGHIG
YVSDEVPLHEHLTGTDNLRVHALLHGIDDDDRIYSELERFGINPADDTKVQYYSTGMRQKLKIAMALFHQPSILILDEPL
NGLDRKAQESVVDIIRRYDGTIMASSHWNETFIELFDRFLAIESGRLNEIV

Sequences:

>Translated_211_residues
MVELPIVMNHVEVRAGDRKLLENVSLAVDKGSRVLLKGENGSGKSTFLKAITGLSLFAGEILIYGQSIIQNREAAVGHIG
YVSDEVPLHEHLTGTDNLRVHALLHGIDDDDRIYSELERFGINPADDTKVQYYSTGMRQKLKIAMALFHQPSILILDEPL
NGLDRKAQESVVDIIRRYDGTIMASSHWNETFIELFDRFLAIESGRLNEIV
>Mature_211_residues
MVELPIVMNHVEVRAGDRKLLENVSLAVDKGSRVLLKGENGSGKSTFLKAITGLSLFAGEILIYGQSIIQNREAAVGHIG
YVSDEVPLHEHLTGTDNLRVHALLHGIDDDDRIYSELERFGINPADDTKVQYYSTGMRQKLKIAMALFHQPSILILDEPL
NGLDRKAQESVVDIIRRYDGTIMASSHWNETFIELFDRFLAIESGRLNEIV

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27881501, Length=203, Percent_Identity=30.0492610837438, Blast_Score=88, Evalue=4e-18,
Organism=Homo sapiens, GI30795238, Length=203, Percent_Identity=30.0492610837438, Blast_Score=88, Evalue=5e-18,
Organism=Homo sapiens, GI153792144, Length=201, Percent_Identity=29.3532338308458, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI150417984, Length=211, Percent_Identity=29.3838862559242, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI116734710, Length=195, Percent_Identity=30.7692307692308, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI27477115, Length=196, Percent_Identity=29.5918367346939, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI45446740, Length=194, Percent_Identity=29.3814432989691, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI47078218, Length=194, Percent_Identity=29.3814432989691, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI6005701, Length=196, Percent_Identity=30.6122448979592, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI27436953, Length=196, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI105990541, Length=176, Percent_Identity=31.25, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI62526033, Length=211, Percent_Identity=29.8578199052133, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI31657092, Length=177, Percent_Identity=31.638418079096, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI21536376, Length=201, Percent_Identity=25.8706467661692, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI11967969, Length=208, Percent_Identity=26.4423076923077, Blast_Score=68, Evalue=5e-12,
Organism=Escherichia coli, GI48994943, Length=214, Percent_Identity=32.2429906542056, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87081782, Length=201, Percent_Identity=28.8557213930348, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1787712, Length=203, Percent_Identity=27.5862068965517, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786703, Length=202, Percent_Identity=29.7029702970297, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1789991, Length=180, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI87081709, Length=215, Percent_Identity=26.9767441860465, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1790467, Length=202, Percent_Identity=26.2376237623762, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788165, Length=201, Percent_Identity=29.8507462686567, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789873, Length=205, Percent_Identity=28.2926829268293, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI48995001, Length=199, Percent_Identity=28.643216080402, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1789751, Length=225, Percent_Identity=29.3333333333333, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1789593, Length=168, Percent_Identity=35.7142857142857, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1788210, Length=200, Percent_Identity=30, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1789672, Length=178, Percent_Identity=29.2134831460674, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787089, Length=221, Percent_Identity=26.2443438914027, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1786975, Length=195, Percent_Identity=32.3076923076923, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI87081791, Length=203, Percent_Identity=28.0788177339901, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787105, Length=176, Percent_Identity=28.9772727272727, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1789032, Length=203, Percent_Identity=27.5862068965517, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786563, Length=161, Percent_Identity=29.1925465838509, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788053, Length=165, Percent_Identity=30.9090909090909, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786319, Length=201, Percent_Identity=27.8606965174129, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1786345, Length=215, Percent_Identity=26.9767441860465, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1788761, Length=206, Percent_Identity=26.2135922330097, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786698, Length=175, Percent_Identity=29.7142857142857, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790544, Length=214, Percent_Identity=26.1682242990654, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788897, Length=183, Percent_Identity=26.775956284153, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788506, Length=176, Percent_Identity=29.5454545454545, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=26, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1788472, Length=200, Percent_Identity=30, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI145693107, Length=175, Percent_Identity=29.7142857142857, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1787370, Length=201, Percent_Identity=25.3731343283582, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1787029, Length=225, Percent_Identity=26.2222222222222, Blast_Score=60, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17510237, Length=204, Percent_Identity=28.921568627451, Blast_Score=77, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71983523, Length=190, Percent_Identity=30, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=190, Percent_Identity=30, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71983516, Length=190, Percent_Identity=30, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=176, Percent_Identity=26.1363636363636, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=218, Percent_Identity=28.4403669724771, Blast_Score=70, Evalue=7e-13,
Organism=Saccharomyces cerevisiae, GI6320874, Length=171, Percent_Identity=31.5789473684211, Blast_Score=68, Evalue=1e-12,
Organism=Saccharomyces cerevisiae, GI6324585, Length=208, Percent_Identity=27.8846153846154, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6320214, Length=213, Percent_Identity=26.2910798122066, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6322177, Length=208, Percent_Identity=29.3269230769231, Blast_Score=66, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6325199, Length=203, Percent_Identity=26.1083743842365, Blast_Score=62, Evalue=7e-11,
Organism=Drosophila melanogaster, GI28573573, Length=191, Percent_Identity=31.9371727748691, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI28573571, Length=191, Percent_Identity=31.9371727748691, Blast_Score=94, Evalue=8e-20,
Organism=Drosophila melanogaster, GI24666092, Length=175, Percent_Identity=34.2857142857143, Blast_Score=84, Evalue=5e-17,
Organism=Drosophila melanogaster, GI28574150, Length=222, Percent_Identity=27.9279279279279, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007328, Length=222, Percent_Identity=27.9279279279279, Blast_Score=82, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24643674, Length=212, Percent_Identity=30.188679245283, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI221512771, Length=192, Percent_Identity=28.125, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24650855, Length=182, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24650853, Length=182, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI281362751, Length=182, Percent_Identity=29.1208791208791, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI85725262, Length=178, Percent_Identity=30.3370786516854, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24582014, Length=202, Percent_Identity=28.2178217821782, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24582012, Length=202, Percent_Identity=28.2178217821782, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI221500365, Length=203, Percent_Identity=26.6009852216749, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007184, Length=203, Percent_Identity=26.6009852216749, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28574533, Length=204, Percent_Identity=25.9803921568627, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24648314, Length=152, Percent_Identity=32.2368421052632, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24641342, Length=200, Percent_Identity=30, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 23612; Mature: 23612

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVELPIVMNHVEVRAGDRKLLENVSLAVDKGSRVLLKGENGSGKSTFLKAITGLSLFAGE
CEECCEEECEEEECCCHHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
ILIYGQSIIQNREAAVGHIGYVSDEVPLHEHLTGTDNLRVHALLHGIDDDDRIYSELERF
HHEECHHHHCCCCHHHEECCCCCCCCCHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHH
GINPADDTKVQYYSTGMRQKLKIAMALFHQPSILILDEPLNGLDRKAQESVVDIIRRYDG
CCCCCCCCEEEEEHHCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
TIMASSHWNETFIELFDRFLAIESGRLNEIV
EEEECCCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVELPIVMNHVEVRAGDRKLLENVSLAVDKGSRVLLKGENGSGKSTFLKAITGLSLFAGE
CEECCEEECEEEECCCHHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
ILIYGQSIIQNREAAVGHIGYVSDEVPLHEHLTGTDNLRVHALLHGIDDDDRIYSELERF
HHEECHHHHCCCCHHHEECCCCCCCCCHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHH
GINPADDTKVQYYSTGMRQKLKIAMALFHQPSILILDEPLNGLDRKAQESVVDIIRRYDG
CCCCCCCCEEEEEHHCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
TIMASSHWNETFIELFDRFLAIESGRLNEIV
EEEECCCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]