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The map label for this gene is spoIIID [H]

Identifier: 52787556

GI number: 52787556

Start: 3700864

End: 3701139

Strand: Reverse

Name: spoIIID [H]

Synonym: BLi03878

Alternate gene names: 52787556

Gene position: 3701139-3700864 (Counterclockwise)

Preceding gene: 52787560

Following gene: 52787555

Centisome position: 87.65

GC content: 39.86

Gene sequence:

>276_bases
GTGCACGATTACATCAAAGAGCGAACAATCAAGATAGGGAAGTACATCGTGGAGACGAAAAAAACGGTTCGTGTGATAGC
GAAGGAGTTTGGTGTTTCCAAAAGTACCGTTCACAAGGATTTGACAGAAAGGCTGCCTGAAATTAATCCTGACCTGGCCA
ATGAAGTAAAAGAAATTCTTGATTATCATAAATCAATCAGACATTTGCGGGGCGGAGAAGCAACAAAACTAAAATACAAG
AAAGAGGAAATCTTTGAAAGAGAACCCGTGCAATAA

Upstream 100 bases:

>100_bases
GGAAAAGCATAAAACGAAGAAGCTGCGCAAATAGCGAATTTTTTCACAAGACGGATCTCATTTCACACTTCTCACATCCA
TTTTAGGGAGGTCGAGTGGT

Downstream 100 bases:

>100_bases
GGAATAATGGCTCAGAAACGAGCAGCGTTTATCAGAATTTCCCGGTATCCTCCGTAAAAAGCCACAAAAATTTTATGAAG
AACTTTAATAAGCTCTCTTT

Product: SpoIIID

Products: NA

Alternate protein names: 14 kDa transcription factor [H]

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MHDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYHKSIRHLRGGEATKLKYK
KEEIFEREPVQ

Sequences:

>Translated_91_residues
MHDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYHKSIRHLRGGEATKLKYK
KEEIFEREPVQ
>Mature_91_residues
MHDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEILDYHKSIRHLRGGEATKLKYK
KEEIFEREPVQ

Specific function: This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR014208
- InterPro:   IPR018356 [H]

Pfam domain/function: PF12116 SpoIIID [H]

EC number: NA

Molecular weight: Translated: 10735; Mature: 10735

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS00894 HTH_DEOR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
DYHKSIRHLRGGEATKLKYKKEEIFEREPVQ
HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MHDYIKERTIKIGKYIVETKKTVRVIAKEFGVSKSTVHKDLTERLPEINPDLANEVKEIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
DYHKSIRHLRGGEATKLKYKKEEIFEREPVQ
HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2514119; 2112673; 9353933; 9384377; 2492118 [H]