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The map label for this gene is sorC [H]

Identifier: 52787547

GI number: 52787547

Start: 3694036

End: 3694998

Strand: Reverse

Name: sorC [H]

Synonym: BLi03868

Alternate gene names: 52787547

Gene position: 3694998-3694036 (Counterclockwise)

Preceding gene: 52787548

Following gene: 52787546

Centisome position: 87.5

GC content: 47.87

Gene sequence:

>963_bases
ATGGAAATGAGGGATGATAAACGCCTTCTGATCAAAGTCTGCAAAATGTACTACGAAGAGGATATGACACAGAGCCAGAT
TGCAAAAGCAACAGGGATATACAGAACAACCGTCGGACGTATGCTGAAAAAAGCGCGTGAGGCAGGAATCGTTAAAATCA
CGATCGATGACCATGTCGGGACACACTATGATTTGGAACGGGAGCTCGAACAGCTGCTCGGGCTTAAAGAAGTGTACATA
TGTGATGCAAAACCGGAACAAACAGCTGAAGACAAGAAGAAACTCGTCGGCAAAGCCGGAGCCGAAATCTTAAAACGAGT
CGTGAAAGACGGGGATACGGTAGGCTTCGCATGGGGGACGACGATGGCGGGAATGATCGGGGAGTTTCACGGCGTCAAAA
AACGGAGCGCTTCATTCGTGCCGCTGGTCGGCGGTCCGGGCGCCATGGATACGAAATATCACGTGAACAGCATCGTCTAC
AGCATTGCGGGTGACTTTGGAGGCACGCCTTACTTCATAGATGCGGCAGCCGTTGTCGAAAAAAAAGAAACGAAGGAGGA
AATCGTCAAGTCCCACTATTTCAAAAAAATAGAAAGGCTGTGGAACGGCCTTACTGTGGCAGCCGTCGGAATCGGGGCGC
CGCTTAGTTCTTCAAATATGATCTGGACCGGATTTTACGGCGATCAGGATATCGAGCGCCTTGAAGAAAAACATGCAGTC
GGAGATATATGCTCGCGTTTCTTTGATCGTTCGGGAGCTTTAGTAGAAACAGAGATTCATGACAGAACCATCGCGATAGA
CATCAACAGGTTAAAGGATTTGGAATATTCCATAGGTCTTGCCGAATCCCATGAAAAAGTTCCTTCGATTATCGGGGCTG
CAAAAGGCCGCTATATTAATGTTTTAGTGACAACTGCCGAAACAGCCAGAGAAATTGCCGAGGAGGTGAGAAATCAATCA
TGA

Upstream 100 bases:

>100_bases
ATTTAAATTGACGTCCAAAAATTCCGTATGTATAATGTAAGCGAATACAACAACAAATGACCAATGTTTGCACAAATGCG
CAAAGGTAAAGGGTGATCTT

Downstream 100 bases:

>100_bases
TCATTTACTTTATCATCGCCCTTGGAGCTGCATGGCTTCTCCAGAGCGTTTTAGGTTTTTGGCAAATCAGGCATTTCAAT
CGAACGTTCGCCGCGTACAG

Product: hypothetical protein

Products: NA

Alternate protein names: Sor operon activator [H]

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MEMRDDKRLLIKVCKMYYEEDMTQSQIAKATGIYRTTVGRMLKKAREAGIVKITIDDHVGTHYDLERELEQLLGLKEVYI
CDAKPEQTAEDKKKLVGKAGAEILKRVVKDGDTVGFAWGTTMAGMIGEFHGVKKRSASFVPLVGGPGAMDTKYHVNSIVY
SIAGDFGGTPYFIDAAAVVEKKETKEEIVKSHYFKKIERLWNGLTVAAVGIGAPLSSSNMIWTGFYGDQDIERLEEKHAV
GDICSRFFDRSGALVETEIHDRTIAIDINRLKDLEYSIGLAESHEKVPSIIGAAKGRYINVLVTTAETAREIAEEVRNQS

Sequences:

>Translated_320_residues
MEMRDDKRLLIKVCKMYYEEDMTQSQIAKATGIYRTTVGRMLKKAREAGIVKITIDDHVGTHYDLERELEQLLGLKEVYI
CDAKPEQTAEDKKKLVGKAGAEILKRVVKDGDTVGFAWGTTMAGMIGEFHGVKKRSASFVPLVGGPGAMDTKYHVNSIVY
SIAGDFGGTPYFIDAAAVVEKKETKEEIVKSHYFKKIERLWNGLTVAAVGIGAPLSSSNMIWTGFYGDQDIERLEEKHAV
GDICSRFFDRSGALVETEIHDRTIAIDINRLKDLEYSIGLAESHEKVPSIIGAAKGRYINVLVTTAETAREIAEEVRNQS
>Mature_320_residues
MEMRDDKRLLIKVCKMYYEEDMTQSQIAKATGIYRTTVGRMLKKAREAGIVKITIDDHVGTHYDLERELEQLLGLKEVYI
CDAKPEQTAEDKKKLVGKAGAEILKRVVKDGDTVGFAWGTTMAGMIGEFHGVKKRSASFVPLVGGPGAMDTKYHVNSIVY
SIAGDFGGTPYFIDAAAVVEKKETKEEIVKSHYFKKIERLWNGLTVAAVGIGAPLSSSNMIWTGFYGDQDIERLEEKHAV
GDICSRFFDRSGALVETEIHDRTIAIDINRLKDLEYSIGLAESHEKVPSIIGAAKGRYINVLVTTAETAREIAEEVRNQS

Specific function: Positively regulates, in the presence of L-sorbose, and negatively regulates, in the absence of L-sorbose, the transcription of the sor operon [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=303, Percent_Identity=26.4026402640264, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787791, Length=306, Percent_Identity=26.1437908496732, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 35543; Mature: 35543

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMRDDKRLLIKVCKMYYEEDMTQSQIAKATGIYRTTVGRMLKKAREAGIVKITIDDHVG
CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
THYDLERELEQLLGLKEVYICDAKPEQTAEDKKKLVGKAGAEILKRVVKDGDTVGFAWGT
CCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHH
TMAGMIGEFHGVKKRSASFVPLVGGPGAMDTKYHVNSIVYSIAGDFGGTPYFIDAAAVVE
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHH
KKETKEEIVKSHYFKKIERLWNGLTVAAVGIGAPLSSSNMIWTGFYGDQDIERLEEKHAV
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHH
GDICSRFFDRSGALVETEIHDRTIAIDINRLKDLEYSIGLAESHEKVPSIIGAAKGRYIN
HHHHHHHHCCCCCEEEEEECCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEE
VLVTTAETAREIAEEVRNQS
EEEECHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEMRDDKRLLIKVCKMYYEEDMTQSQIAKATGIYRTTVGRMLKKAREAGIVKITIDDHVG
CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
THYDLERELEQLLGLKEVYICDAKPEQTAEDKKKLVGKAGAEILKRVVKDGDTVGFAWGT
CCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHH
TMAGMIGEFHGVKKRSASFVPLVGGPGAMDTKYHVNSIVYSIAGDFGGTPYFIDAAAVVE
HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHH
KKETKEEIVKSHYFKKIERLWNGLTVAAVGIGAPLSSSNMIWTGFYGDQDIERLEEKHAV
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHH
GDICSRFFDRSGALVETEIHDRTIAIDINRLKDLEYSIGLAESHEKVPSIIGAAKGRYIN
HHHHHHHHCCCCCEEEEEECCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEE
VLVTTAETAREIAEEVRNQS
EEEECHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]