| Definition | Bacillus licheniformis ATCC 14580, complete genome. |
|---|---|
| Accession | NC_006322 |
| Length | 4,222,645 |
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The map label for this gene is lytD [H]
Identifier: 52787501
GI number: 52787501
Start: 3645651
End: 3648281
Strand: Reverse
Name: lytD [H]
Synonym: BLi03821
Alternate gene names: 52787501
Gene position: 3648281-3645651 (Counterclockwise)
Preceding gene: 52787502
Following gene: 52787498
Centisome position: 86.4
GC content: 46.98
Gene sequence:
>2631_bases GTGAAAAACATTAGAAAAACCGTTATTTTTGCTGCAATCATTTTGCTCGTACATACGGCAGTCCCGGCAATTCCTGCTTT AGCAGCATATACCGATACTTCCGTCTACAAAATTGAAACAGCAAAAGAGTTTAATAGCGAAAGCGAAGCGCTCAAAGCAG CCGAACAACTGAAAAAGGACACGGGATGGAAAGCCGAGGTCAAACCTTCAGGGAAAAACGGCACAACATACGTTTTGACA TCAGAAGGTGTCGAAGGGGAGAGCAGAGCAAAAAATCTGCTTTTGCAGTTTGAAAAAGAAACCGGTTTGAAGGCGTCCTA TGGTCCGATTGGAAAAAAAGAACCGTTTTCCAAAGCGGTATCAAAGGAATTTGCCGGTGAAGAAAAAGCCAAGGAATGGG CGCTCCAATTTGAAAAAGAAACCGGTCTGAAAGCAACCTATACACTTGCAGGGAACAGGGAAGCATACGTGAAGGTTGCC ACCGGAGGAATCGAAGGCGAAGACAACACGAAAGCCATCCTCGATCGTTTTCAAAAAGCGACCGGCCTCAAAGCGTCGTA TGCACCATACGGAGCGGGACAAGCGATCGTCAAGCTTTATTCTGCAGAAATCGCAGATGAGAGCAAAGCGAAAAGCCTGC TTGTCCAGTTTGAAAAAGAAACGGCCCTTAAAGGAACGATAGAGACCGTAAAGAAACAACAGCCTAAATATAAAATTGCG ACAAGTTCGATACAAGGCGAAACAAACGCGAAAAACCTGCTGAAGCAGTTTGAAAAAGAGCTCAAAGTCAAAGGGGCATA TGAAGCCGCCGGTCAGCCGGCACAGCTATACAATGTGAAATCGGGATATTTTAATGACGAAAAGAGCGCGAAAAATGCCG CCGGACAAATTAAAAAGAAAACCGGTCTCGCCTCAAGCACGGAAAAGGTAAAAGGTACACGCTTCTGGATCGTAAGCATG AAAAGCGTAGACAGTCAAAACCTCAAAAAAATCGACGCCTTTTTCAAAAAGAAAACGTGGCGTTATACTGCTGCAAAGGC GGGGAAAAAGCAGACATCTTTCAGAATCGTTTCCGTCCCGCTTTCAGATCAAAAGAAAGCAAACGATGGCATCCGGTTTT TTAAAAACAAAAATATTCAGGCTTCTGCGCAAAGCACCGGCAGCACGACCGTCAGCCGCTTCCGGATTGCGTCTGCTGAA ACCGCCGTTCAAGCGCGAATCAATAAAGGGCTTGAATTCTTTAAGAAAAACGGTGCGGCGGGAACGGCCGGATCAACAGG AAAAAAAGTGTACAGCCACTATCAGCTGACAACGGAATCCGTATACGAACAGAACAAAGTGACGCAGGCGCTCAATTTCT TTAAAGAAACAGGCATTCACGCAGAGGCCGTGAAGACCGGCCAATATTACAGCCGCTACAAACTGAGTTCGGAAGCTCTG ATCGGCACGGAACAATTACAGCAGGCGCTCGGATTTTTCAGCAAGCGGAATATACCGGGCAAGATTGAACAAACGGGTGA GTACGGCTACAGGCAGTACCGGGTGACGACAGGTCGAATCACAAGCAAAGCAGATCTCGACAAGGGCTTGAATGTCTTTA AGAAGAACAATGTCAGCGCAACTTACCAAACAAAGACGGTCAGCCTGTTTCATATCTCGATCAATGAACAATTTACAGGG AAAGACCGTGCGGATGCTGCCGCCAATCGGATCAAAACGAATTACGGCTGGCCGGTGAATGTCGTCAAAGTGAAAAACGG CCCGCAAATCACAACGACTGACTACGGAATCACGCTCAGCCAGATGATCGATAAACAGATGAAAGTCAGCCCGCAAACGG ATGCGCCGGCTTATGTTTCATTGAGCTACATCAATACGGCGAACCAAACCGTCACGGCTGATCTGCTGAATATCAGGTCA AGCCCCCTTGTGACAGGCGGCAACATCATCGGACAGCTGCAAAAAGGGGATAAAGTCAACATCATCTCCCAGGAAAACGG CTGGGCAAAAATCAGAATGAATTGGCGAAATGCCAGCAGGGATGAAGTCGAGAAATATGTCAATCCGGAAAATTTCACAC AAGACAGCTCGGCATACTTCCAATTTTTAAAACTGTCGCAAACGGCCGGATTGAATGCTGCCGAGGTCAATGCAAAAATC CTTTATAATAAAGGGGTTTTGACAGGCAAAGGGCAAGCGTTCATCGACGCGGCGAGAGCATACAGCATCAATGAACTGTA CCTCATTTCACACTCGCTCCTTGAGACGGGCAACGGAACTTCCGAGTTGGCTAAAGGAACGATGTTCAACGGCAAAAAGG TTTACAATATGTACGGCGTCGGGGCTTACGACAGCAACCCGCTTTACTACGGCGCAAAATACGCCTATGAACAAGGGTGG TTCACACCTGAGGCCGCCATTATGGGCGGAGCCAAATTCATCGGTGAAAAATACATTCACCACCCGACTTACAAACAGGA CACCCTCTATAAAATGAGATGGTCTCCGAATGCCCTTCACCAATATGCGACAGATGTCGGATGGGCTTGTAAGCAGGTGG GGAGAATGTACAGTCTGTATACATTGCTCGATCAATATACGCTGTACTATGATGTGCCGGTTTATCGGTAA
Upstream 100 bases:
>100_bases GTTAAGCTTTTTTATTGTAAAAAAATAATCCGGCTCGCCGATAAAAAGAGAAAGCAAGTTTTAGAAATTGGGAGGCTCAT AGGCGAGGGGAGTAAAGAAT
Downstream 100 bases:
>100_bases TCATCATAAAAAGACCGGCCATGTTCCATTAGGAACCGGCCGGTCTTTTTTCATTTGCCGTCATATGCTCGCTCATAAAG TTCAACAGGCGCATGCTGGC
Product: LytD
Products: NA
Alternate protein names: Cell wall-associated polypeptide 90; CWBP90 [H]
Number of amino acids: Translated: 876; Mature: 876
Protein sequence:
>876_residues MKNIRKTVIFAAIILLVHTAVPAIPALAAYTDTSVYKIETAKEFNSESEALKAAEQLKKDTGWKAEVKPSGKNGTTYVLT SEGVEGESRAKNLLLQFEKETGLKASYGPIGKKEPFSKAVSKEFAGEEKAKEWALQFEKETGLKATYTLAGNREAYVKVA TGGIEGEDNTKAILDRFQKATGLKASYAPYGAGQAIVKLYSAEIADESKAKSLLVQFEKETALKGTIETVKKQQPKYKIA TSSIQGETNAKNLLKQFEKELKVKGAYEAAGQPAQLYNVKSGYFNDEKSAKNAAGQIKKKTGLASSTEKVKGTRFWIVSM KSVDSQNLKKIDAFFKKKTWRYTAAKAGKKQTSFRIVSVPLSDQKKANDGIRFFKNKNIQASAQSTGSTTVSRFRIASAE TAVQARINKGLEFFKKNGAAGTAGSTGKKVYSHYQLTTESVYEQNKVTQALNFFKETGIHAEAVKTGQYYSRYKLSSEAL IGTEQLQQALGFFSKRNIPGKIEQTGEYGYRQYRVTTGRITSKADLDKGLNVFKKNNVSATYQTKTVSLFHISINEQFTG KDRADAAANRIKTNYGWPVNVVKVKNGPQITTTDYGITLSQMIDKQMKVSPQTDAPAYVSLSYINTANQTVTADLLNIRS SPLVTGGNIIGQLQKGDKVNIISQENGWAKIRMNWRNASRDEVEKYVNPENFTQDSSAYFQFLKLSQTAGLNAAEVNAKI LYNKGVLTGKGQAFIDAARAYSINELYLISHSLLETGNGTSELAKGTMFNGKKVYNMYGVGAYDSNPLYYGAKYAYEQGW FTPEAAIMGGAKFIGEKYIHHPTYKQDTLYKMRWSPNALHQYATDVGWACKQVGRMYSLYTLLDQYTLYYDVPVYR
Sequences:
>Translated_876_residues MKNIRKTVIFAAIILLVHTAVPAIPALAAYTDTSVYKIETAKEFNSESEALKAAEQLKKDTGWKAEVKPSGKNGTTYVLT SEGVEGESRAKNLLLQFEKETGLKASYGPIGKKEPFSKAVSKEFAGEEKAKEWALQFEKETGLKATYTLAGNREAYVKVA TGGIEGEDNTKAILDRFQKATGLKASYAPYGAGQAIVKLYSAEIADESKAKSLLVQFEKETALKGTIETVKKQQPKYKIA TSSIQGETNAKNLLKQFEKELKVKGAYEAAGQPAQLYNVKSGYFNDEKSAKNAAGQIKKKTGLASSTEKVKGTRFWIVSM KSVDSQNLKKIDAFFKKKTWRYTAAKAGKKQTSFRIVSVPLSDQKKANDGIRFFKNKNIQASAQSTGSTTVSRFRIASAE TAVQARINKGLEFFKKNGAAGTAGSTGKKVYSHYQLTTESVYEQNKVTQALNFFKETGIHAEAVKTGQYYSRYKLSSEAL IGTEQLQQALGFFSKRNIPGKIEQTGEYGYRQYRVTTGRITSKADLDKGLNVFKKNNVSATYQTKTVSLFHISINEQFTG KDRADAAANRIKTNYGWPVNVVKVKNGPQITTTDYGITLSQMIDKQMKVSPQTDAPAYVSLSYINTANQTVTADLLNIRS SPLVTGGNIIGQLQKGDKVNIISQENGWAKIRMNWRNASRDEVEKYVNPENFTQDSSAYFQFLKLSQTAGLNAAEVNAKI LYNKGVLTGKGQAFIDAARAYSINELYLISHSLLETGNGTSELAKGTMFNGKKVYNMYGVGAYDSNPLYYGAKYAYEQGW FTPEAAIMGGAKFIGEKYIHHPTYKQDTLYKMRWSPNALHQYATDVGWACKQVGRMYSLYTLLDQYTLYYDVPVYR >Mature_876_residues MKNIRKTVIFAAIILLVHTAVPAIPALAAYTDTSVYKIETAKEFNSESEALKAAEQLKKDTGWKAEVKPSGKNGTTYVLT SEGVEGESRAKNLLLQFEKETGLKASYGPIGKKEPFSKAVSKEFAGEEKAKEWALQFEKETGLKATYTLAGNREAYVKVA TGGIEGEDNTKAILDRFQKATGLKASYAPYGAGQAIVKLYSAEIADESKAKSLLVQFEKETALKGTIETVKKQQPKYKIA TSSIQGETNAKNLLKQFEKELKVKGAYEAAGQPAQLYNVKSGYFNDEKSAKNAAGQIKKKTGLASSTEKVKGTRFWIVSM KSVDSQNLKKIDAFFKKKTWRYTAAKAGKKQTSFRIVSVPLSDQKKANDGIRFFKNKNIQASAQSTGSTTVSRFRIASAE TAVQARINKGLEFFKKNGAAGTAGSTGKKVYSHYQLTTESVYEQNKVTQALNFFKETGIHAEAVKTGQYYSRYKLSSEAL IGTEQLQQALGFFSKRNIPGKIEQTGEYGYRQYRVTTGRITSKADLDKGLNVFKKNNVSATYQTKTVSLFHISINEQFTG KDRADAAANRIKTNYGWPVNVVKVKNGPQITTTDYGITLSQMIDKQMKVSPQTDAPAYVSLSYINTANQTVTADLLNIRS SPLVTGGNIIGQLQKGDKVNIISQENGWAKIRMNWRNASRDEVEKYVNPENFTQDSSAYFQFLKLSQTAGLNAAEVNAKI LYNKGVLTGKGQAFIDAARAYSINELYLISHSLLETGNGTSELAKGTMFNGKKVYNMYGVGAYDSNPLYYGAKYAYEQGW FTPEAAIMGGAKFIGEKYIHHPTYKQDTLYKMRWSPNALHQYATDVGWACKQVGRMYSLYTLLDQYTLYYDVPVYR
Specific function: Cell wall hydrolase not involved in cell autolysis, competence, sporulation or germination. It hydrolyzes the beta-1,4 glycan bond between the N-acetylglucosaminyl and the N- acetylmuramoyl residues in the glycan chain [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Secreted. Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 73 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013338 - InterPro: IPR002901 - InterPro: IPR003646 - InterPro: IPR013247 - InterPro: IPR007730 [H]
Pfam domain/function: PF01832 Glucosaminidase; PF08239 SH3_3; PF05036 SPOR [H]
EC number: =3.2.1.96 [H]
Molecular weight: Translated: 97048; Mature: 97048
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNIRKTVIFAAIILLVHTAVPAIPALAAYTDTSVYKIETAKEFNSESEALKAAEQLKKD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCHHHHHHHHHHHHHC TGWKAEVKPSGKNGTTYVLTSEGVEGESRAKNLLLQFEKETGLKASYGPIGKKEPFSKAV CCCEEEECCCCCCCEEEEEECCCCCCHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHH SKEFAGEEKAKEWALQFEKETGLKATYTLAGNREAYVKVATGGIEGEDNTKAILDRFQKA HHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHH TGLKASYAPYGAGQAIVKLYSAEIADESKAKSLLVQFEKETALKGTIETVKKQQPKYKIA CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHEEHHHHHHHHHHHHHHHCCCCEEEE TSSIQGETNAKNLLKQFEKELKVKGAYEAAGQPAQLYNVKSGYFNDEKSAKNAAGQIKKK ECCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH TGLASSTEKVKGTRFWIVSMKSVDSQNLKKIDAFFKKKTWRYTAAKAGKKQTSFRIVSVP CCCCCCHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHEEEHHHHCCCCCCCEEEEEEC LSDQKKANDGIRFFKNKNIQASAQSTGSTTVSRFRIASAETAVQARINKGLEFFKKNGAA CCCCCCCCCCEEEEECCCCEECCCCCCCCCHHHEEECCHHHHHHHHHHHHHHHHHCCCCC GTAGSTGKKVYSHYQLTTESVYEQNKVTQALNFFKETGIHAEAVKTGQYYSRYKLSSEAL CCCCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHEECCCCHH IGTEQLQQALGFFSKRNIPGKIEQTGEYGYRQYRVTTGRITSKADLDKGLNVFKKNNVSA CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCHHHCCCCCCE TYQTKTVSLFHISINEQFTGKDRADAAANRIKTNYGWPVNVVKVKNGPQITTTDYGITLS EEEEEEEEEEEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCEEEECCCCEEHH QMIDKQMKVSPQTDAPAYVSLSYINTANQTVTADLLNIRSSPLVTGGNIIGQLQKGDKVN HHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEHHHHHCCCCCCEECCHHEEEECCCCEEE IISQENGWAKIRMNWRNASRDEVEKYVNPENFTQDSSAYFQFLKLSQTAGLNAAEVNAKI EEECCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCEEE LYNKGVLTGKGQAFIDAARAYSINELYLISHSLLETGNGTSELAKGTMFNGKKVYNMYGV EEECCEEECCCHHHHHHHHHCCCCEEEEEEHHHHHCCCCHHHHHCCCCCCCEEEEEEEEE GAYDSNPLYYGAKYAYEQGWFTPEAAIMGGAKFIGEKYIHHPTYKQDTLYKMRWSPNALH CCCCCCCEEECEEEHHHCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHH QYATDVGWACKQVGRMYSLYTLLDQYTLYYDVPVYR HHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCC >Mature Secondary Structure MKNIRKTVIFAAIILLVHTAVPAIPALAAYTDTSVYKIETAKEFNSESEALKAAEQLKKD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCHHHHHHHHHHHHHC TGWKAEVKPSGKNGTTYVLTSEGVEGESRAKNLLLQFEKETGLKASYGPIGKKEPFSKAV CCCEEEECCCCCCCEEEEEECCCCCCHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHH SKEFAGEEKAKEWALQFEKETGLKATYTLAGNREAYVKVATGGIEGEDNTKAILDRFQKA HHHHCCHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHH TGLKASYAPYGAGQAIVKLYSAEIADESKAKSLLVQFEKETALKGTIETVKKQQPKYKIA CCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHEEHHHHHHHHHHHHHHHCCCCEEEE TSSIQGETNAKNLLKQFEKELKVKGAYEAAGQPAQLYNVKSGYFNDEKSAKNAAGQIKKK ECCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH TGLASSTEKVKGTRFWIVSMKSVDSQNLKKIDAFFKKKTWRYTAAKAGKKQTSFRIVSVP CCCCCCHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHEEEHHHHCCCCCCCEEEEEEC LSDQKKANDGIRFFKNKNIQASAQSTGSTTVSRFRIASAETAVQARINKGLEFFKKNGAA CCCCCCCCCCEEEEECCCCEECCCCCCCCCHHHEEECCHHHHHHHHHHHHHHHHHCCCCC GTAGSTGKKVYSHYQLTTESVYEQNKVTQALNFFKETGIHAEAVKTGQYYSRYKLSSEAL CCCCCCCHHHHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHEECCCCHH IGTEQLQQALGFFSKRNIPGKIEQTGEYGYRQYRVTTGRITSKADLDKGLNVFKKNNVSA CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHCCHHHCCCCCCE TYQTKTVSLFHISINEQFTGKDRADAAANRIKTNYGWPVNVVKVKNGPQITTTDYGITLS EEEEEEEEEEEEEECCCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCEEEECCCCEEHH QMIDKQMKVSPQTDAPAYVSLSYINTANQTVTADLLNIRSSPLVTGGNIIGQLQKGDKVN HHHHHHHCCCCCCCCCCEEEEEEEECCCCEEEHHHHHCCCCCCEECCHHEEEECCCCEEE IISQENGWAKIRMNWRNASRDEVEKYVNPENFTQDSSAYFQFLKLSQTAGLNAAEVNAKI EEECCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHCCEEE LYNKGVLTGKGQAFIDAARAYSINELYLISHSLLETGNGTSELAKGTMFNGKKVYNMYGV EEECCEEECCCHHHHHHHHHCCCCEEEEEEHHHHHCCCCHHHHHCCCCCCCEEEEEEEEE GAYDSNPLYYGAKYAYEQGWFTPEAAIMGGAKFIGEKYIHHPTYKQDTLYKMRWSPNALH CCCCCCCEEECEEEHHHCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHH QYATDVGWACKQVGRMYSLYTLLDQYTLYYDVPVYR HHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7934877; 7581999; 9384377 [H]