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The map label for this gene is yvyD [H]

Identifier: 52787454

GI number: 52787454

Start: 3597059

End: 3597619

Strand: Reverse

Name: yvyD [H]

Synonym: BLi03774

Alternate gene names: 52787454

Gene position: 3597619-3597059 (Counterclockwise)

Preceding gene: 52787455

Following gene: 52787453

Centisome position: 85.2

GC content: 42.42

Gene sequence:

>561_bases
ATGGAGTTCAACGTCAGAGGAGAAAATATTGAGGTAACACCAGCGTTAAGAGAACACGTCGAGAAGAAGATTGGAAAGCT
TGAGCGTTATTTTGAAAATAACGTTGATGCGATTGTTCACGTCAACTTAAAATTCTACAATGATCAGGAATCAAAGGTGG
AAGTGACAATTCCAATGACAGACCTCTCTCTCCGTGCGGAAGTTCACCACGAAGATATGTACAATGCAATCGATCTCGCA
ACGAACAAACTGGAACGTCAAATACGCAAGCATAAAACAAAAGTTAACCGGAAATTCCGCGAAAAAGGTTCTTCGAAGCA
TGTTTTTGCAGAAGGAAACGGCATCGGAACGGCCGTGCAGGAAGACATTGAGGATGAACAGCCGCAGGTTGTCCGTCAAA
AGCGCTTTAATTTAAAGCCGATGGATAATGAAGAAGCGATTTTACAAATGAATATGCTTGGACACAGCTTCTTTGTATTC
ACGAACGCCGAAACCAATCTGACCAATGTGGTCTACCGAAGAAACGATGGAAAATACGGTTTGATCGAGCCGAACGAATA
A

Upstream 100 bases:

>100_bases
TCACGGATTTTTCACATAATTTTTACGTTTATGCAGGAATTCAGCAGGGAAAAGACGAAATATATTTACATATCCTTAAT
ATAAAGGAGGCGTTCTTTTG

Downstream 100 bases:

>100_bases
ATATATCGAGTCCCCTCCCGGATCTTCCGCAGAGGGGATTTTTTCCGTTCCCCCGCGGTAAATTGTTTGGAAATGACAAA
AGGTATGATATGATATTGCA

Product: YvyD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MEFNVRGENIEVTPALREHVEKKIGKLERYFENNVDAIVHVNLKFYNDQESKVEVTIPMTDLSLRAEVHHEDMYNAIDLA
TNKLERQIRKHKTKVNRKFREKGSSKHVFAEGNGIGTAVQEDIEDEQPQVVRQKRFNLKPMDNEEAILQMNMLGHSFFVF
TNAETNLTNVVYRRNDGKYGLIEPNE

Sequences:

>Translated_186_residues
MEFNVRGENIEVTPALREHVEKKIGKLERYFENNVDAIVHVNLKFYNDQESKVEVTIPMTDLSLRAEVHHEDMYNAIDLA
TNKLERQIRKHKTKVNRKFREKGSSKHVFAEGNGIGTAVQEDIEDEQPQVVRQKRFNLKPMDNEEAILQMNMLGHSFFVF
TNAETNLTNVVYRRNDGKYGLIEPNE
>Mature_186_residues
MEFNVRGENIEVTPALREHVEKKIGKLERYFENNVDAIVHVNLKFYNDQESKVEVTIPMTDLSLRAEVHHEDMYNAIDLA
TNKLERQIRKHKTKVNRKFREKGSSKHVFAEGNGIGTAVQEDIEDEQPQVVRQKRFNLKPMDNEEAILQMNMLGHSFFVF
TNAETNLTNVVYRRNDGKYGLIEPNE

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=99, Percent_Identity=36.3636363636364, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 21689; Mature: 21689

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFNVRGENIEVTPALREHVEKKIGKLERYFENNVDAIVHVNLKFYNDQESKVEVTIPMT
CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEEE
DLSLRAEVHHEDMYNAIDLATNKLERQIRKHKTKVNRKFREKGSSKHVFAEGNGIGTAVQ
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHH
EDIEDEQPQVVRQKRFNLKPMDNEEAILQMNMLGHSFFVFTNAETNLTNVVYRRNDGKYG
HHCCCCCHHHHHHHHCCCCCCCCCHHEEEEEECCCEEEEEECCCCCCEEEEEEECCCCEE
LIEPNE
CCCCCC
>Mature Secondary Structure
MEFNVRGENIEVTPALREHVEKKIGKLERYFENNVDAIVHVNLKFYNDQESKVEVTIPMT
CCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEEEE
DLSLRAEVHHEDMYNAIDLATNKLERQIRKHKTKVNRKFREKGSSKHVFAEGNGIGTAVQ
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHH
EDIEDEQPQVVRQKRFNLKPMDNEEAILQMNMLGHSFFVFTNAETNLTNVVYRRNDGKYG
HHCCCCCHHHHHHHHCCCCCCCCCHHEEEEEECCCEEEEEECCCCCCEEEEEEECCCCEE
LIEPNE
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8195064; 9384377; 1901557 [H]