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The map label for this gene is yvjD [H]

Identifier: 52787443

GI number: 52787443

Start: 3583516

End: 3584727

Strand: Reverse

Name: yvjD [H]

Synonym: BLi03762

Alternate gene names: 52787443

Gene position: 3584727-3583516 (Counterclockwise)

Preceding gene: 52787444

Following gene: 52787442

Centisome position: 84.89

GC content: 49.67

Gene sequence:

>1212_bases
TTGTCAGTTGAAGAAAGCTTAATTGAACTTTTAAAAGGAGCAGGATTGTTCTTTTTGCACCCGCTCTTCTATTTTATGAT
GATTATGAGTCTTGCTTACGGCTATGCCCGGATCAAACGTGAAAGAAAGACGTTCCATACGCGTATTGAAGATATTTATG
ACGAGTTCAAATTTACATATTCCAAGGGACTTCTGGCAGGACTTGTACTGTCCATTGTTTCGTTCGGCTTGGGGCTGTAT
CTCCCGATGGGCATGCTGGTTTTAATAGCGGCGGTCAGCGTTGCCGCAGCTTTAACTTTCAGACAGAGTCTGCTGTCAGC
GGCATATACGCTTGGCGTGAGCATCGTCGTTGGTTTATGTATTGAATACACCGGTTTCGGAGCGCTTGACGCGTTTCTGC
CGCAGCTGTCCCTCGCGAATTGGTCGGCTGCTGCCGTCTTGCTCGGACTTCTGTTGGTGGCGGAAGGAGTGCTTGTCTAT
AAAACGGCACATATCAAAACGTCCCCTGCGATTGTCATGAGCACAAGGGGTCTCCCGATCGGACAGCAGATTGCGGGCAG
AACCTGGCTTCTGCCGTTGTTTATTCTTATTCCGGGACATGCGATCGAATCATCTGTTCCGTGGTGGCCTGTTTTGTCAT
TTAACGGCGGCTTTGAGCTCTTGTGGATTCCGTATTTCATCGGCTTCGGCCAAAGGGTTCAAGGATCGCTTCCGATTGAA
AGCATTAAAATTACAGCGAAGCGCATCAGCGTGCTTGGCATCATCATTCTGCTGATCGCGGCCGGAAGCATATGGTGGAC
TCCGCTTGCCGCCCTTGCCGCCGGAGCAGCGATCGCAGGAAGGGCCTTTTTATCCTGGAAGCAGCGGATGAACGACAATT
CCGCCCCTTTCCATTTTTCAAAGAGAGACCAGGGCTTGATGGTGCTCGGGATTATTCCGAACACGCCGGCAGCCGATCTC
GGTCTCAAGATCGGCGAAATCATCACGAAGGTCAACGGGATTGAAGTGAAAAATGCGGCGGACTTCTACGAAGCGCTCCA
AAAGAACAGGGCTTTCTTCAAGCTTGAAGTCGTCGGTTTAAACAATGAGATTCGTTTTGAACAAAGAGCTTCTTATGAAG
GGGAGCATCATGAGCTCGGCATCATCTTTGTAAAAGAAGAGGATGCGGTGATGAAGCATGCCGAGGCAGCAGCCTCAGCA
GAAACAGAATAA

Upstream 100 bases:

>100_bases
GACGCTTTAGACAAGCTGGGTTTCCTTAAAATATCCAACGTTAAAAAGCTGCCGTGTTGAAGGCGGCCTGAAATGCTTGG
CTGAGGCGGTGAACGTTCCC

Downstream 100 bases:

>100_bases
CCGATGTTAAAAAAGCGCCGCTTTCAGGCGCTTTTGCTTTTGCCTTGTTTCGAAACTTTTTGGTTGTCTTTTACAAAACG
TTCCGCTAGGATGATGGATA

Product: YvjD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MSVEESLIELLKGAGLFFLHPLFYFMMIMSLAYGYARIKRERKTFHTRIEDIYDEFKFTYSKGLLAGLVLSIVSFGLGLY
LPMGMLVLIAAVSVAAALTFRQSLLSAAYTLGVSIVVGLCIEYTGFGALDAFLPQLSLANWSAAAVLLGLLLVAEGVLVY
KTAHIKTSPAIVMSTRGLPIGQQIAGRTWLLPLFILIPGHAIESSVPWWPVLSFNGGFELLWIPYFIGFGQRVQGSLPIE
SIKITAKRISVLGIIILLIAAGSIWWTPLAALAAGAAIAGRAFLSWKQRMNDNSAPFHFSKRDQGLMVLGIIPNTPAADL
GLKIGEIITKVNGIEVKNAADFYEALQKNRAFFKLEVVGLNNEIRFEQRASYEGEHHELGIIFVKEEDAVMKHAEAAASA
ETE

Sequences:

>Translated_403_residues
MSVEESLIELLKGAGLFFLHPLFYFMMIMSLAYGYARIKRERKTFHTRIEDIYDEFKFTYSKGLLAGLVLSIVSFGLGLY
LPMGMLVLIAAVSVAAALTFRQSLLSAAYTLGVSIVVGLCIEYTGFGALDAFLPQLSLANWSAAAVLLGLLLVAEGVLVY
KTAHIKTSPAIVMSTRGLPIGQQIAGRTWLLPLFILIPGHAIESSVPWWPVLSFNGGFELLWIPYFIGFGQRVQGSLPIE
SIKITAKRISVLGIIILLIAAGSIWWTPLAALAAGAAIAGRAFLSWKQRMNDNSAPFHFSKRDQGLMVLGIIPNTPAADL
GLKIGEIITKVNGIEVKNAADFYEALQKNRAFFKLEVVGLNNEIRFEQRASYEGEHHELGIIFVKEEDAVMKHAEAAASA
ETE
>Mature_402_residues
SVEESLIELLKGAGLFFLHPLFYFMMIMSLAYGYARIKRERKTFHTRIEDIYDEFKFTYSKGLLAGLVLSIVSFGLGLYL
PMGMLVLIAAVSVAAALTFRQSLLSAAYTLGVSIVVGLCIEYTGFGALDAFLPQLSLANWSAAAVLLGLLLVAEGVLVYK
TAHIKTSPAIVMSTRGLPIGQQIAGRTWLLPLFILIPGHAIESSVPWWPVLSFNGGFELLWIPYFIGFGQRVQGSLPIES
IKITAKRISVLGIIILLIAAGSIWWTPLAALAAGAAIAGRAFLSWKQRMNDNSAPFHFSKRDQGLMVLGIIPNTPAADLG
LKIGEIITKVNGIEVKNAADFYEALQKNRAFFKLEVVGLNNEIRFEQRASYEGEHHELGIIFVKEEDAVMKHAEAAASAE
TE

Specific function: Required for surface-adhering cells to differentiate into hyperflagellated and elongated swarm cells [H]

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44082; Mature: 43951

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVEESLIELLKGAGLFFLHPLFYFMMIMSLAYGYARIKRERKTFHTRIEDIYDEFKFTY
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKGLLAGLVLSIVSFGLGLYLPMGMLVLIAAVSVAAALTFRQSLLSAAYTLGVSIVVGLC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEYTGFGALDAFLPQLSLANWSAAAVLLGLLLVAEGVLVYKTAHIKTSPAIVMSTRGLPI
HHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEECCCCC
GQQIAGRTWLLPLFILIPGHAIESSVPWWPVLSFNGGFELLWIPYFIGFGQRVQGSLPIE
CHHHCCCHHHHHHHHHCCCHHHCCCCCCCEEEEECCCEEEEEHHHHHCCCCCCCCCCCHH
SIKITAKRISVLGIIILLIAAGSIWWTPLAALAAGAAIAGRAFLSWKQRMNDNSAPFHFS
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEC
KRDQGLMVLGIIPNTPAADLGLKIGEIITKVNGIEVKNAADFYEALQKNRAFFKLEVVGL
CCCCCEEEEEECCCCCCHHHCCHHHHHHHHCCCCEECCHHHHHHHHHCCCCEEEEEEEEC
NNEIRFEQRASYEGEHHELGIIFVKEEDAVMKHAEAAASAETE
CCCCCCHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SVEESLIELLKGAGLFFLHPLFYFMMIMSLAYGYARIKRERKTFHTRIEDIYDEFKFTY
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKGLLAGLVLSIVSFGLGLYLPMGMLVLIAAVSVAAALTFRQSLLSAAYTLGVSIVVGLC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEYTGFGALDAFLPQLSLANWSAAAVLLGLLLVAEGVLVYKTAHIKTSPAIVMSTRGLPI
HHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEECCCCC
GQQIAGRTWLLPLFILIPGHAIESSVPWWPVLSFNGGFELLWIPYFIGFGQRVQGSLPIE
CHHHCCCHHHHHHHHHCCCHHHCCCCCCCEEEEECCCEEEEEHHHHHCCCCCCCCCCCHH
SIKITAKRISVLGIIILLIAAGSIWWTPLAALAAGAAIAGRAFLSWKQRMNDNSAPFHFS
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEC
KRDQGLMVLGIIPNTPAADLGLKIGEIITKVNGIEVKNAADFYEALQKNRAFFKLEVVGL
CCCCCEEEEEECCCCCCHHHCCHHHHHHHHCCCCEECCHHHHHHHHHCCCCEEEEEEEEC
NNEIRFEQRASYEGEHHELGIIFVKEEDAVMKHAEAAASAETE
CCCCCCHHHCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]