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The map label for this gene is ydfE [H]

Identifier: 52787400

GI number: 52787400

Start: 3545331

End: 3545930

Strand: Reverse

Name: ydfE [H]

Synonym: BLi03717

Alternate gene names: 52787400

Gene position: 3545930-3545331 (Counterclockwise)

Preceding gene: 52787404

Following gene: 52787398

Centisome position: 83.97

GC content: 46.0

Gene sequence:

>600_bases
ATGGAACAAAACAGCAAAATTATTCAGCCAAGCATTTTATATTACGGAACACCAGTCATTTTACTCAGCACAATGAACGA
AGACGGTTCCACGAATCTCAGCCCGCTGTCATCTTCTTGGGCGCTCGGGGATTCGATCGTACTCGGTATTGGAACCGAAG
GTAAAGCATTGGAAAATTTAGAGAGGCATGCTGGATGCGTTATCAATGTGCCGGATTCATCTTTATGGAGAAATGTAGAA
CGGCTGGCTTCCTATACCGGCAAACGATTCGTTCCGGAAGAAAAAAAGCGGCTCGGCTTTACTTACCTTAAGGAGAAATT
TGAAGCCGGCGGATTTACGGCCGCGGATTCCTTGGCAGTGAAACCTGAAAGAGTCGCCGATTGCCCGCTTCAAATTGAAG
CGGAAGCTGTCAACATTCGCATTCCGGAACATTCCCCGTATTTTGCCGTCATTGAAACAAAAGTGCTTCATGTGCACGCA
CATGAAGCGATTTTAAAAGGGGAACACCACATCGATCCTCAAAAATGGGAACCTTTGATTTATCTTTTCAGACACTATTT
TGGCTTAGGAGGAGAGCTTGGCAAAACGTTCCGCGCCTGA

Upstream 100 bases:

>100_bases
ATTCACGTTCATTACACTTCCTCCTAAAATGCAATCGATACTTCGATGTTAATTGAAATATTGAAGAATTACAATAAAAG
CATAAAAGGAGGAGACGCAT

Downstream 100 bases:

>100_bases
AAGATGCGCGTTATCTCAGTTCTTTGACTATATCTTTTGGCCGTTTGCCCTGAAGACCGTCAATCAGGTTTTGAACGGCG
CTTTTCAGCATGTTGACGTG

Product: YdfE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MEQNSKIIQPSILYYGTPVILLSTMNEDGSTNLSPLSSSWALGDSIVLGIGTEGKALENLERHAGCVINVPDSSLWRNVE
RLASYTGKRFVPEEKKRLGFTYLKEKFEAGGFTAADSLAVKPERVADCPLQIEAEAVNIRIPEHSPYFAVIETKVLHVHA
HEAILKGEHHIDPQKWEPLIYLFRHYFGLGGELGKTFRA

Sequences:

>Translated_199_residues
MEQNSKIIQPSILYYGTPVILLSTMNEDGSTNLSPLSSSWALGDSIVLGIGTEGKALENLERHAGCVINVPDSSLWRNVE
RLASYTGKRFVPEEKKRLGFTYLKEKFEAGGFTAADSLAVKPERVADCPLQIEAEAVNIRIPEHSPYFAVIETKVLHVHA
HEAILKGEHHIDPQKWEPLIYLFRHYFGLGGELGKTFRA
>Mature_199_residues
MEQNSKIIQPSILYYGTPVILLSTMNEDGSTNLSPLSSSWALGDSIVLGIGTEGKALENLERHAGCVINVPDSSLWRNVE
RLASYTGKRFVPEEKKRLGFTYLKEKFEAGGFTAADSLAVKPERVADCPLQIEAEAVNIRIPEHSPYFAVIETKVLHVHA
HEAILKGEHHIDPQKWEPLIYLFRHYFGLGGELGKTFRA

Specific function: Unknown

COG id: COG1853

COG function: function code R; Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flavoredoxin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002563
- InterPro:   IPR012349
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01613 Flavin_Reduct [H]

EC number: NA

Molecular weight: Translated: 22188; Mature: 22188

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQNSKIIQPSILYYGTPVILLSTMNEDGSTNLSPLSSSWALGDSIVLGIGTEGKALENL
CCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHH
ERHAGCVINVPDSSLWRNVERLASYTGKRFVPEEKKRLGFTYLKEKFEAGGFTAADSLAV
HHHCCEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEE
KPERVADCPLQIEAEAVNIRIPEHSPYFAVIETKVLHVHAHEAILKGEHHIDPQKWEPLI
CCHHHCCCCEEEEEEEEEEECCCCCCEEEEEEEEEEEEEHHHHHHCCCCCCCHHHCCHHH
YLFRHYFGLGGELGKTFRA
HHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure
MEQNSKIIQPSILYYGTPVILLSTMNEDGSTNLSPLSSSWALGDSIVLGIGTEGKALENL
CCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHH
ERHAGCVINVPDSSLWRNVERLASYTGKRFVPEEKKRLGFTYLKEKFEAGGFTAADSLAV
HHHCCEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEE
KPERVADCPLQIEAEAVNIRIPEHSPYFAVIETKVLHVHAHEAILKGEHHIDPQKWEPLI
CCHHHCCCCEEEEEEEEEEECCCCCCEEEEEEEEEEEEEHHHHHHCCCCCCCHHHCCHHH
YLFRHYFGLGGELGKTFRA
HHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]