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The map label for this gene is abnA [H]

Identifier: 52786759

GI number: 52786759

Start: 2915611

End: 2916573

Strand: Reverse

Name: abnA [H]

Synonym: BLi03029

Alternate gene names: 52786759

Gene position: 2916573-2915611 (Counterclockwise)

Preceding gene: 52786760

Following gene: 52786758

Centisome position: 69.07

GC content: 49.43

Gene sequence:

>963_bases
ATGAAAAATGTGTTGCGGAAAATGTCTTTGGCGGCCTTGATATTCGGACTGCTGCTGTCTTTTTCGATGCCTGAATCAGG
CAAAGCGGCGTTTTGGGACACAAAAGGGGACAATTTCATCCATGACCCTTCTATCATTAAAGAGGGAAATACATGGTATA
CATTTGGAACAGGGCTCGGCACAGGGCTGCGTGTCATTAAGTCAACAGACGGGAGAAACTGGAGTGCTGCCCCGAGTATT
TTTCCAACTCCATTGTCATGGTGGAAGATGTACGTACCAAATCATGAACCGCATCAATGGGCACCGGATATCAGCTACTA
TAACGGCCGGTATTGGCTGTACTACTCGGTTTCGTCTTTCGGTTCAAACACATCAGCGATAGGGCTCGCATCGACAGACC
GGATTTCATCCGGCCAATGGCGGGATGACGGGCTGGTCATCAGGTCGACATCCGGCGATCAGTTTAATGCCATTGACCCT
GATCTGGTCATTGACAAAGACGGAAACCCCTGGCTCTCATTCGGTTCCTTCTGGAGCGGCATTAAGCTGACAAGGCTTGA
TAAAAACACGATGAAACCGACGGGAAGCCTGTATTCGATCGCCTCAAGGCCGAATAACGGAGGAGCGGTTGAAGCCCCGA
ACATTACCTACAAAGACGGCTACTATTACTTATTTGTCTCGTTTGACAGCTGCTGCAAAGGGGTGGACAGCACATATAAA
ATAGCCTATGGCCGTTCAACGAGCATTACGGGACCCTATTATGATAAAAGCGGCAAAAATATGATGAACGGCGGAGGGAC
GATCCTGGACTCCGGCAATGACCGCTGGAAAGGGCCGGGACATCAGGATGTTCTGAACAACTCGATCCTTGTCAGGCATG
CTTACGACGCGCTGGACAATGGTGTATCAAAGCTGCTCATCAATGACTTGTACTGGGATTCCCAAGGGTGGCCGACTTAT
TAA

Upstream 100 bases:

>100_bases
ATGTTAAAGACAGCGCTTACATATATAAACATTGTTCGAAAAATTGACAAAGAAAGGGAGGCATTGTTTTTTTCATTACA
AGAACAGGAGTGTGAGCTGA

Downstream 100 bases:

>100_bases
CAGCAGATGACGGGCGGTTTCCGCCCGGTTTTTTTGTTCTGAAATCTGTCAAAAAAAATAAAAAACATACCGGAAATTAA
ATTGACAGTTTTTTTCATAA

Product: hypothetical protein

Products: NA

Alternate protein names: Endo-1,5-alpha-L-arabinanase; ABN; Endo-arabinanase [H]

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MKNVLRKMSLAALIFGLLLSFSMPESGKAAFWDTKGDNFIHDPSIIKEGNTWYTFGTGLGTGLRVIKSTDGRNWSAAPSI
FPTPLSWWKMYVPNHEPHQWAPDISYYNGRYWLYYSVSSFGSNTSAIGLASTDRISSGQWRDDGLVIRSTSGDQFNAIDP
DLVIDKDGNPWLSFGSFWSGIKLTRLDKNTMKPTGSLYSIASRPNNGGAVEAPNITYKDGYYYLFVSFDSCCKGVDSTYK
IAYGRSTSITGPYYDKSGKNMMNGGGTILDSGNDRWKGPGHQDVLNNSILVRHAYDALDNGVSKLLINDLYWDSQGWPTY

Sequences:

>Translated_320_residues
MKNVLRKMSLAALIFGLLLSFSMPESGKAAFWDTKGDNFIHDPSIIKEGNTWYTFGTGLGTGLRVIKSTDGRNWSAAPSI
FPTPLSWWKMYVPNHEPHQWAPDISYYNGRYWLYYSVSSFGSNTSAIGLASTDRISSGQWRDDGLVIRSTSGDQFNAIDP
DLVIDKDGNPWLSFGSFWSGIKLTRLDKNTMKPTGSLYSIASRPNNGGAVEAPNITYKDGYYYLFVSFDSCCKGVDSTYK
IAYGRSTSITGPYYDKSGKNMMNGGGTILDSGNDRWKGPGHQDVLNNSILVRHAYDALDNGVSKLLINDLYWDSQGWPTY
>Mature_320_residues
MKNVLRKMSLAALIFGLLLSFSMPESGKAAFWDTKGDNFIHDPSIIKEGNTWYTFGTGLGTGLRVIKSTDGRNWSAAPSI
FPTPLSWWKMYVPNHEPHQWAPDISYYNGRYWLYYSVSSFGSNTSAIGLASTDRISSGQWRDDGLVIRSTSGDQFNAIDP
DLVIDKDGNPWLSFGSFWSGIKLTRLDKNTMKPTGSLYSIASRPNNGGAVEAPNITYKDGYYYLFVSFDSCCKGVDSTYK
IAYGRSTSITGPYYDKSGKNMMNGGGTILDSGNDRWKGPGHQDVLNNSILVRHAYDALDNGVSKLLINDLYWDSQGWPTY

Specific function: Catalyzes the hydrolysis of the alpha-1,5-linked L- arabinofuranoside backbone. Its preferred substrate is linear 1,5- alpha-L-arabinan. It is also active towards branched sugar beet arabinan, but inactive towards larch wood arabinogalactan, wheat arabino

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006710
- InterPro:   IPR016840 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.99 [H]

Molecular weight: Translated: 35582; Mature: 35582

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVLRKMSLAALIFGLLLSFSMPESGKAAFWDTKGDNFIHDPSIIKEGNTWYTFGTGLG
CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEECCHHEECCCEEEEECCCCC
TGLRVIKSTDGRNWSAAPSIFPTPLSWWKMYVPNHEPHQWAPDISYYNGRYWLYYSVSSF
CCEEEEECCCCCCCCCCCCCCCCCHHHHEEECCCCCCCCCCCCCCEECCEEEEEEEHHHC
GSNTSAIGLASTDRISSGQWRDDGLVIRSTSGDQFNAIDPDLVIDKDGNPWLSFGSFWSG
CCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCEECCCCCCC
IKLTRLDKNTMKPTGSLYSIASRPNNGGAVEAPNITYKDGYYYLFVSFDSCCKGVDSTYK
EEEEEECCCCCCCCCCEEEEECCCCCCCEEECCCEEEECCEEEEEEEHHHHHCCCCCCEE
IAYGRSTSITGPYYDKSGKNMMNGGGTILDSGNDRWKGPGHQDVLNNSILVRHAYDALDN
EEECCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCHHHHHCCCEEEEEHHHHHHH
GVSKLLINDLYWDSQGWPTY
HHHHHHHHHHEECCCCCCCC
>Mature Secondary Structure
MKNVLRKMSLAALIFGLLLSFSMPESGKAAFWDTKGDNFIHDPSIIKEGNTWYTFGTGLG
CHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEECCHHEECCCEEEEECCCCC
TGLRVIKSTDGRNWSAAPSIFPTPLSWWKMYVPNHEPHQWAPDISYYNGRYWLYYSVSSF
CCEEEEECCCCCCCCCCCCCCCCCHHHHEEECCCCCCCCCCCCCCEECCEEEEEEEHHHC
GSNTSAIGLASTDRISSGQWRDDGLVIRSTSGDQFNAIDPDLVIDKDGNPWLSFGSFWSG
CCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEECCCCCCEECCCCCCC
IKLTRLDKNTMKPTGSLYSIASRPNNGGAVEAPNITYKDGYYYLFVSFDSCCKGVDSTYK
EEEEEECCCCCCCCCCEEEEECCCCCCCEEECCCEEEECCEEEEEEEHHHHHCCCCCCEE
IAYGRSTSITGPYYDKSGKNMMNGGGTILDSGNDRWKGPGHQDVLNNSILVRHAYDALDN
EEECCCCCCCCCCCCCCCCEEECCCCEEEECCCCCCCCCCHHHHHCCCEEEEEHHHHHHH
GVSKLLINDLYWDSQGWPTY
HHHHHHHHHHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]