Click here to switch to the map view.

The map label for this gene is ysmB [H]

Identifier: 52786719

GI number: 52786719

Start: 2870460

End: 2870903

Strand: Reverse

Name: ysmB [H]

Synonym: BLi02988

Alternate gene names: 52786719

Gene position: 2870903-2870460 (Counterclockwise)

Preceding gene: 52786720

Following gene: 52786718

Centisome position: 67.99

GC content: 43.24

Gene sequence:

>444_bases
ATGAATTCGAATGCTTCTTTGAATCACATAGCGGACATTGAAAAATCACTCCGCCATATTGCGGGCATCATTAAACAAAA
AGGAAGAGAAATTCTCACCCAATATACGATTACCCCTCCCCAGTTTGTCGGTCTTCAATGGCTGTATGAATACGGGGATA
TGACGATCGGCGAGTTATCACAAAAGATGTACCTGGCGTGCAGCACCACAACGGATTTAATTGACCGAATGGAGAAAAAC
AACCTCGTTGAACGGGTTAAAGATCCGTCCGACAGGCGCGTAGTCCGCATTCATCTTCTATCGGAAGGAGAGCGGATCAT
CCAGGAGGTCATTCAAAAAAGGCAGGACTATTTAGAAGACATGTTAGAGGCGTTTTCCGAGGAAGAAACAGCCGCGTTTG
AAAAATTATTAATTAAACTTCAGCAGGAAATGAACAGAAAATGA

Upstream 100 bases:

>100_bases
TTGTATATTCATGTTGAAGTCTTGCAATTTGTGTAGAAAAGAAGGAAAATAGACTCAAGTGTTTTGAAAACAAAACAACG
AGTCGAGCGAGGTAGAGAAA

Downstream 100 bases:

>100_bases
GGCGATTTTGTTGGATCAACCGATAGGAGTCATTGATTCGGGAGTCGGCGGTTTAACCGTTGCAAAAGAAATCATGAGGC
AGCTGCCGAAAGAAAAAATT

Product: YsmB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 147; Mature: 147

Protein sequence:

>147_residues
MNSNASLNHIADIEKSLRHIAGIIKQKGREILTQYTITPPQFVGLQWLYEYGDMTIGELSQKMYLACSTTTDLIDRMEKN
NLVERVKDPSDRRVVRIHLLSEGERIIQEVIQKRQDYLEDMLEAFSEEETAAFEKLLIKLQQEMNRK

Sequences:

>Translated_147_residues
MNSNASLNHIADIEKSLRHIAGIIKQKGREILTQYTITPPQFVGLQWLYEYGDMTIGELSQKMYLACSTTTDLIDRMEKN
NLVERVKDPSDRRVVRIHLLSEGERIIQEVIQKRQDYLEDMLEAFSEEETAAFEKLLIKLQQEMNRK
>Mature_147_residues
MNSNASLNHIADIEKSLRHIAGIIKQKGREILTQYTITPPQFVGLQWLYEYGDMTIGELSQKMYLACSTTTDLIDRMEKN
NLVERVKDPSDRRVVRIHLLSEGERIIQEVIQKRQDYLEDMLEAFSEEETAAFEKLLIKLQQEMNRK

Specific function: Repressor Of The Marrab Operon Which Is Involved In The Activation Of Both Antibiotic Resistance And Oxidative Stress Genes. Binds To The Maro Operator/Promoter Site. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17186; Mature: 17186

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSNASLNHIADIEKSLRHIAGIIKQKGREILTQYTITPPQFVGLQWLYEYGDMTIGELS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHH
QKMYLACSTTTDLIDRMEKNNLVERVKDPSDRRVVRIHLLSEGERIIQEVIQKRQDYLED
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHH
MLEAFSEEETAAFEKLLIKLQQEMNRK
HHHHHCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNSNASLNHIADIEKSLRHIAGIIKQKGREILTQYTITPPQFVGLQWLYEYGDMTIGELS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHH
QKMYLACSTTTDLIDRMEKNNLVERVKDPSDRRVVRIHLLSEGERIIQEVIQKRQDYLED
HHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHH
MLEAFSEEETAAFEKLLIKLQQEMNRK
HHHHHCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]