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The map label for this gene is radC [C]

Identifier: 52786665

GI number: 52786665

Start: 2815785

End: 2816459

Strand: Reverse

Name: radC [C]

Synonym: BLi02933

Alternate gene names: 52786665

Gene position: 2816459-2815785 (Counterclockwise)

Preceding gene: 52786666

Following gene: 52786664

Centisome position: 66.7

GC content: 48.3

Gene sequence:

>675_bases
TTGAAATTAAAAGATTTTCCTGATGAAGAAAGGCCAAGGGAGCGCCTTCTCAACACAGGCGCCGAAAGTTTGTCAAACCA
TGAACTGCTTGCGATACTGCTCAGAACCGGTACGAAAAAAGAATCGGTTCTTCAGCTTTCAAGCCGGCTGCTTCAAACGT
TTGACGGCCTCCGTTTGTTAAAAGAAGCATCCGCCGAGGAGCTTTCAAGCATTTCCGGGATCGGCCGCGCAAAAGCCGTG
CAGATTTTGGCGGCCCTTGAGCTTGGCCGGCGCATTCACAGTCTGGCTTGCAAAGACCGTTATGTGATTCGTTTTCCCGA
AGATGCGGCCAATTTTTTAATGGGGGATATGCGCTTTCTCTCTCAGGAGCACTTCGTATGTGTGTATCTGAACACGAAAA
ACCAGGTGATCCACAAGCGCACGGTTTTTATAGGGAGCCTGAACTCTTCAATCGTCCATCCGAGGGAAGTGTTTAAAGAA
GCTTTAAAGCGCTCCGCAGCTTCATTCATCTGCGTCCACAATCATCCGTCCGGAGATCCGGCTCCAAGCCGCGAAGACAT
AGAAGTTACACAGCGCCTTCACGAGTCCGGACAGCTGCTCGGAATCGAATTGCTCGATCATATCATCATCGGTGATCAAA
AATTTGTGAGCTTAAAAGAAAAAGGATATTTGTAA

Upstream 100 bases:

>100_bases
CAAAACGATGAGAATGCTGAAAACGTTTGATCTCCACTCCTTTTGATGTACCGAACGAGAAGGGAATCAAAAGGGAGGGT
TTATCATAAGCGATCTGCCA

Downstream 100 bases:

>100_bases
CACTTTTTTTTTCATTAAATTAAGCTATAATAGAATTTATGGGTTTTTGCTTAGGAATATTGTTTTAAGAAAGGAAGATA
CATACAAATGTTTGGAATTG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKLKDFPDEERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLLKEASAEELSSISGIGRAKAV
QILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFLSQEHFVCVYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKE
ALKRSAASFICVHNHPSGDPAPSREDIEVTQRLHESGQLLGIELLDHIIIGDQKFVSLKEKGYL

Sequences:

>Translated_224_residues
MKLKDFPDEERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLLKEASAEELSSISGIGRAKAV
QILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFLSQEHFVCVYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKE
ALKRSAASFICVHNHPSGDPAPSREDIEVTQRLHESGQLLGIELLDHIIIGDQKFVSLKEKGYL
>Mature_224_residues
MKLKDFPDEERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLLKEASAEELSSISGIGRAKAV
QILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFLSQEHFVCVYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKE
ALKRSAASFICVHNHPSGDPAPSREDIEVTQRLHESGQLLGIELLDHIIIGDQKFVSLKEKGYL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=38.0281690140845, Blast_Score=160, Evalue=4e-41,
Organism=Escherichia coli, GI1788997, Length=118, Percent_Identity=45.7627118644068, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788312, Length=116, Percent_Identity=42.2413793103448, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI2367100, Length=113, Percent_Identity=44.2477876106195, Blast_Score=100, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2933_BACLD (Q65GL3)

Other databases:

- EMBL:   CP000002
- EMBL:   AE017333
- RefSeq:   YP_080077.1
- RefSeq:   YP_092494.1
- ProteinModelPortal:   Q65GL3
- SMR:   Q65GL3
- STRING:   Q65GL3
- EnsemblBacteria:   EBBACT00000055830
- EnsemblBacteria:   EBBACT00000059962
- GeneID:   3028876
- GeneID:   3098372
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi02933
- KEGG:   bli:BL00636
- NMPDR:   fig|279010.5.peg.3260
- eggNOG:   COG2003
- GeneTree:   EBGT00050000002627
- HOGENOM:   HBG751042
- OMA:   LDHLILG
- ProtClustDB:   PRK00024
- BioCyc:   BLIC279010-1:BLI02933-MONOMER
- BioCyc:   BLIC279010:BL00636-MONOMER
- InterPro:   IPR003583
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- SMART:   SM00278
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 25239; Mature: 25239

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKDFPDEERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLL
CCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
KEASAEELSSISGIGRAKAVQILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFL
HHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHH
SQEHFVCVYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKEALKRSAASFICVHNHPSGDP
CCCCEEEEEECCCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCC
APSREDIEVTQRLHESGQLLGIELLDHIIIGDQKFVSLKEKGYL
CCCCHHHHHHHHHHHCCCEEHHHHHHHHHCCCHHHHHHHCCCCC
>Mature Secondary Structure
MKLKDFPDEERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLL
CCCCCCCCCCHHHHHHHHCCHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
KEASAEELSSISGIGRAKAVQILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFL
HHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHH
SQEHFVCVYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKEALKRSAASFICVHNHPSGDP
CCCCEEEEEECCCCCCHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHCEEEEECCCCCCC
APSREDIEVTQRLHESGQLLGIELLDHIIIGDQKFVSLKEKGYL
CCCCHHHHHHHHHHHCCCEEHHHHHHHHHCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA