Click here to switch to the map view.

The map label for this gene is yrvE [H]

Identifier: 52786621

GI number: 52786621

Start: 2778905

End: 2781253

Strand: Reverse

Name: yrvE [H]

Synonym: BLi02889

Alternate gene names: 52786621

Gene position: 2781253-2778905 (Counterclockwise)

Preceding gene: 52786622

Following gene: 52786620

Centisome position: 65.87

GC content: 48.74

Gene sequence:

>2349_bases
ATGTTAGCGTCAAAAATGCGTTGGGACGTGCAAACGCCCGACAAAGAAAAGGTGGAGCAGCTCGCCGGAAGGTTAGGCAT
TACTCCCCTTGCCGCCTCATTGCTTGTCATGAGAGGTTACGATACAGCCGACAAAGCATCTTCATTTTTATATGGCAATG
ATGCACGTTTTCACGATCCTTATCTGCTGAAAGATATGGAAAAAGCTGTACGGCGAATCAAACAGGCAATTTCAGATCAA
GAAAAGATTATGATTTACGGCGATTATGATGCGGACGGTGTGACAAGCACGACTGTCCTTTTGCAAATGTTGAAAAAATG
TTCAGCACAAGCCGATTTTTATATACCTGACCGCTTTAAAGAAGGGTACGGTCCGAATGAAGCGGCCTTTCGCGGGATCA
AAGAATCAGGCTATTCATTGATCATTACAGTTGACACAGGCATTGCCGGCGTTCATGAAGCTGAAGTCGCTAAAGAGCTC
GGCATCGACCTGATCATTACGGATCACCATGAGCCGGGTCCCGTTTTGCCGGATGCTTATGCGATCATTCATCCGAAACA
GCCGGGCTGCGGCTATCCATTTAAAGAGCTTGCCGGCGTCGGTGTGGCATTTAAGCTTGCCCATGCCTTGAACGGAGAGC
TTCCGGAAGATTTGCTCGACCTTTGTGCGATCGGTACGATTGCCGATCTTGTGCCGCTTCATGATGAAAACAGGCAGATA
GCCAAGCGCGGCATGGAACAGTTCAGGAAAACGAAGCGTCCAGGATTAAAAGCGCTGGCGAAAATTGCCGGAGCGGAGAT
ACATAACGCGGATGAAGAGACCATCGGTTTTCAAATCGCGCCCCGCTTAAACGCGGTCGGCAGAATTGAACAGGCTGACC
CGGCCGTTTACCTCCTGAACACAGAAGACGAAAGAGAAGCGGAAGAGCTTGCTGAGGACATCAACGCCTTGAACAAGGAG
CGCCAAAAAATCGTCAATCAGATGACAGAGGAAGCCGTTCAGATGATCGAGGAGGAAGGCCTTGACCAGCCTGTGATCGT
CGTAGCGCGGCCGGGCTGGAATCCTGGCGTCGTGGGAATCGTGGCTTCAAAGCTTGTCGAGCGGTTTTACAGGCCCGCCA
TCGTCCTTGGCGTCGATGAAGAAAAAGGAATTGCCAAAGGATCTGCGCGCAGCATCAAAGGATTTGATTTATTTCAAAAC
CTTTCCGAGTGCCGGGATATTCTCCCGCACTTCGGCGGCCACCCGATGGCAGCCGGAATGACGCTCAACCTGGAAGACGT
TTCGGCTCTGAGGGAGAGAATCAACCGTCAGGCTGAAGCGGTTCTGACCGAGGCAGATTTTATCCCCGTCCAAGACGTCG
ATTTGTGCTGCCGGCTCGAAGATATATCGGTTGACAGCATTGCCGAAATGAACTTGCTGGCGCCGTTCGGCACGGGAAAC
CCGAAGCCGTTCGTTCTTGTCAGCGACGTAAAAATTGATGACGCCAGAAAAATCGGCGCCAACAAGAATCATTTGAAGCT
TGTGCTTGCAGACGACGGGAACAAGCTCGATTGCATCGGATTTTATAAAGGCGATATCGAAGAAGGAATCGTTCCTGGAG
CAAAGATCTCGATTGTCGGGGAACTGTCGATTAACGAATGGAATAACAGAAAAAAACCGCAGCTGATGATCAAAGATGCG
GCCGTCAATGAATGGCAGCTGTTTGATCTGCGGGGAAAACGGTCATGGGAAGAAAAAATATTGAAGCTGGACCCTGCGAA
ACGGGCGTGCATCTGCTTCCGCGAGGAAACAAAAGCAAAGCTGGCAGGGACAGGCCTTGAAGAAGAGCTGACCGTCATCA
GCGGCCCTGAAGATGCAGAGCGGCTCGACCTTGAGAGCCGTTATGCGGTATTTATAGATATTCCGCAGTCGCTCGACATC
TTTGATCATGTAATAAACGGCAAAAAGCTGGAGCGCATTTATCTGATTTTTTATCAATCAGACGAACATTTTTTCTCAAC
ATTCCCAACAAGGGAATATTTTAAATGGTACTATGCTTTCCTCCTGAAAAGAGGTTCTTTTGACTTGCCGAAATACGGCG
GAGAGCTTGCCAGACATAAAGGCTGGACAAAAGACACAATTGATTTTATGACAAAGGTGTTTTTTGAGCTCGGTTTTGTT
ACAATAGAGAATGGTGTTTTATCTGTTGTTTATCATGCCGAAAAGCGCGATTTAACAGATTCTGAAACCTACCGGGAAAA
ACAGCGCCTGATTGAATTGGAGCAAAAGCTCATTTATTCTTCGGCGGATGAGCTTAAACAGTGGCTGGATAAGCGGATGG
CGGAAAAAGCCGGCGCTTATAAAGTATGA

Upstream 100 bases:

>100_bases
CGGCGGCGCCCGAAAACCAGAAAGACTAGAAAGATTGTACGAAATAAATTGAATCCCCTCATGCCGCTCTAGTATAATAG
TGTGGTTGAGGGGTGAATTT

Downstream 100 bases:

>100_bases
GGAGGACATGAAGACAGATGGATTTGAAGAAGTATGTGACAATTGTGCCGGATTACCCGAAGGAAGGCGTACAATTTAAA
GATATTACAACATTGATGGA

Product: YrvE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 782; Mature: 782

Protein sequence:

>782_residues
MLASKMRWDVQTPDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLYGNDARFHDPYLLKDMEKAVRRIKQAISDQ
EKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRFKEGYGPNEAAFRGIKESGYSLIITVDTGIAGVHEAEVAKEL
GIDLIITDHHEPGPVLPDAYAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLHDENRQI
AKRGMEQFRKTKRPGLKALAKIAGAEIHNADEETIGFQIAPRLNAVGRIEQADPAVYLLNTEDEREAEELAEDINALNKE
RQKIVNQMTEEAVQMIEEEGLDQPVIVVARPGWNPGVVGIVASKLVERFYRPAIVLGVDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEADFIPVQDVDLCCRLEDISVDSIAEMNLLAPFGTGN
PKPFVLVSDVKIDDARKIGANKNHLKLVLADDGNKLDCIGFYKGDIEEGIVPGAKISIVGELSINEWNNRKKPQLMIKDA
AVNEWQLFDLRGKRSWEEKILKLDPAKRACICFREETKAKLAGTGLEEELTVISGPEDAERLDLESRYAVFIDIPQSLDI
FDHVINGKKLERIYLIFYQSDEHFFSTFPTREYFKWYYAFLLKRGSFDLPKYGGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYHAEKRDLTDSETYREKQRLIELEQKLIYSSADELKQWLDKRMAEKAGAYKV

Sequences:

>Translated_782_residues
MLASKMRWDVQTPDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLYGNDARFHDPYLLKDMEKAVRRIKQAISDQ
EKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRFKEGYGPNEAAFRGIKESGYSLIITVDTGIAGVHEAEVAKEL
GIDLIITDHHEPGPVLPDAYAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLHDENRQI
AKRGMEQFRKTKRPGLKALAKIAGAEIHNADEETIGFQIAPRLNAVGRIEQADPAVYLLNTEDEREAEELAEDINALNKE
RQKIVNQMTEEAVQMIEEEGLDQPVIVVARPGWNPGVVGIVASKLVERFYRPAIVLGVDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEADFIPVQDVDLCCRLEDISVDSIAEMNLLAPFGTGN
PKPFVLVSDVKIDDARKIGANKNHLKLVLADDGNKLDCIGFYKGDIEEGIVPGAKISIVGELSINEWNNRKKPQLMIKDA
AVNEWQLFDLRGKRSWEEKILKLDPAKRACICFREETKAKLAGTGLEEELTVISGPEDAERLDLESRYAVFIDIPQSLDI
FDHVINGKKLERIYLIFYQSDEHFFSTFPTREYFKWYYAFLLKRGSFDLPKYGGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYHAEKRDLTDSETYREKQRLIELEQKLIYSSADELKQWLDKRMAEKAGAYKV
>Mature_782_residues
MLASKMRWDVQTPDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLYGNDARFHDPYLLKDMEKAVRRIKQAISDQ
EKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRFKEGYGPNEAAFRGIKESGYSLIITVDTGIAGVHEAEVAKEL
GIDLIITDHHEPGPVLPDAYAIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLHDENRQI
AKRGMEQFRKTKRPGLKALAKIAGAEIHNADEETIGFQIAPRLNAVGRIEQADPAVYLLNTEDEREAEELAEDINALNKE
RQKIVNQMTEEAVQMIEEEGLDQPVIVVARPGWNPGVVGIVASKLVERFYRPAIVLGVDEEKGIAKGSARSIKGFDLFQN
LSECRDILPHFGGHPMAAGMTLNLEDVSALRERINRQAEAVLTEADFIPVQDVDLCCRLEDISVDSIAEMNLLAPFGTGN
PKPFVLVSDVKIDDARKIGANKNHLKLVLADDGNKLDCIGFYKGDIEEGIVPGAKISIVGELSINEWNNRKKPQLMIKDA
AVNEWQLFDLRGKRSWEEKILKLDPAKRACICFREETKAKLAGTGLEEELTVISGPEDAERLDLESRYAVFIDIPQSLDI
FDHVINGKKLERIYLIFYQSDEHFFSTFPTREYFKWYYAFLLKRGSFDLPKYGGELARHKGWTKDTIDFMTKVFFELGFV
TIENGVLSVVYHAEKRDLTDSETYREKQRLIELEQKLIYSSADELKQWLDKRMAEKAGAYKV

Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]

COG id: COG0608

COG function: function code L; Single-stranded DNA-specific exonuclease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789259, Length=534, Percent_Identity=33.3333333333333, Blast_Score=256, Evalue=3e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003156
- InterPro:   IPR001667
- InterPro:   IPR004610
- InterPro:   IPR018779 [H]

Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 87705; Mature: 87705

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLASKMRWDVQTPDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLYGNDARFHDP
CCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHCCCEECCCCCCCCC
YLLKDMEKAVRRIKQAISDQEKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRFK
HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHH
EGYGPNEAAFRGIKESGYSLIITVDTGIAGVHEAEVAKELGIDLIITDHHEPGPVLPDAY
CCCCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCE
AIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLHDENRQI
EEEECCCCCCCCCHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
AKRGMEQFRKTKRPGLKALAKIAGAEIHNADEETIGFQIAPRLNAVGRIEQADPAVYLLN
HHHHHHHHHHHCCCHHHHHHHHHCCHHCCCCCHHCCEEECCCCCHHCCCCCCCCEEEEEC
TEDEREAEELAEDINALNKERQKIVNQMTEEAVQMIEEEGLDQPVIVVARPGWNPGVVGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
VASKLVERFYRPAIVLGVDEEKGIAKGSARSIKGFDLFQNLSECRDILPHFGGHPMAAGM
HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCE
TLNLEDVSALRERINRQAEAVLTEADFIPVQDVDLCCRLEDISVDSIAEMNLLAPFGTGN
EECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCHHHHHCCEEEECCCCC
PKPFVLVSDVKIDDARKIGANKNHLKLVLADDGNKLDCIGFYKGDIEEGIVPGAKISIVG
CCCEEEEECCEECCHHHCCCCCCEEEEEEECCCCEEEEEEEECCCHHHCCCCCCEEEEEE
ELSINEWNNRKKPQLMIKDAAVNEWQLFDLRGKRSWEEKILKLDPAKRACICFREETKAK
EEEECCCCCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHCCCCCHHEEEECHHHHHH
LAGTGLEEELTVISGPEDAERLDLESRYAVFIDIPQSLDIFDHVINGKKLERIYLIFYQS
HHCCCCCCCEEEECCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHCCCEEEEEEEEEEEC
DEHFFSTFPTREYFKWYYAFLLKRGSFDLPKYGGELARHKGWTKDTIDFMTKVFFELGFV
CCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCE
TIENGVLSVVYHAEKRDLTDSETYREKQRLIELEQKLIYSSADELKQWLDKRMAEKAGAY
EECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
KV
CC
>Mature Secondary Structure
MLASKMRWDVQTPDKEKVEQLAGRLGITPLAASLLVMRGYDTADKASSFLYGNDARFHDP
CCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHCCCEECCCCCCCCC
YLLKDMEKAVRRIKQAISDQEKIMIYGDYDADGVTSTTVLLQMLKKCSAQADFYIPDRFK
HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHH
EGYGPNEAAFRGIKESGYSLIITVDTGIAGVHEAEVAKELGIDLIITDHHEPGPVLPDAY
CCCCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCE
AIIHPKQPGCGYPFKELAGVGVAFKLAHALNGELPEDLLDLCAIGTIADLVPLHDENRQI
EEEECCCCCCCCCHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH
AKRGMEQFRKTKRPGLKALAKIAGAEIHNADEETIGFQIAPRLNAVGRIEQADPAVYLLN
HHHHHHHHHHHCCCHHHHHHHHHCCHHCCCCCHHCCEEECCCCCHHCCCCCCCCEEEEEC
TEDEREAEELAEDINALNKERQKIVNQMTEEAVQMIEEEGLDQPVIVVARPGWNPGVVGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
VASKLVERFYRPAIVLGVDEEKGIAKGSARSIKGFDLFQNLSECRDILPHFGGHPMAAGM
HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCE
TLNLEDVSALRERINRQAEAVLTEADFIPVQDVDLCCRLEDISVDSIAEMNLLAPFGTGN
EECHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCHHHHHCCEEEECCCCC
PKPFVLVSDVKIDDARKIGANKNHLKLVLADDGNKLDCIGFYKGDIEEGIVPGAKISIVG
CCCEEEEECCEECCHHHCCCCCCEEEEEEECCCCEEEEEEEECCCHHHCCCCCCEEEEEE
ELSINEWNNRKKPQLMIKDAAVNEWQLFDLRGKRSWEEKILKLDPAKRACICFREETKAK
EEEECCCCCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHCCCCCHHEEEECHHHHHH
LAGTGLEEELTVISGPEDAERLDLESRYAVFIDIPQSLDIFDHVINGKKLERIYLIFYQS
HHCCCCCCCEEEECCCCCHHHCCCCCCEEEEEECCCCHHHHHHHHCCCEEEEEEEEEEEC
DEHFFSTFPTREYFKWYYAFLLKRGSFDLPKYGGELARHKGWTKDTIDFMTKVFFELGFV
CCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCE
TIENGVLSVVYHAEKRDLTDSETYREKQRLIELEQKLIYSSADELKQWLDKRMAEKAGAY
EECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC
KV
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on ester bonds [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]