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The map label for this gene is yrrK [C]

Identifier: 52786601

GI number: 52786601

Start: 2755283

End: 2755702

Strand: Reverse

Name: yrrK [C]

Synonym: BLi02867

Alternate gene names: 52786601

Gene position: 2755702-2755283 (Counterclockwise)

Preceding gene: 52786602

Following gene: 52786600

Centisome position: 65.26

GC content: 49.52

Gene sequence:

>420_bases
ATGCGAATATTAGGTCTGGATTTAGGTTCGAAAACGCTCGGCGTAGCGCTGAGCGATGAAATGGGCTGGACGGCTCAAGG
GATAGAAACGATTAAAATCGACGAGGCGGGCGGTGACTACGGCTTGAACCGCCTTGCCGAATTGACGAAAGACTATGTAA
TAGACAAGATTGTACTCGGTTTTCCCAAAAACATGAACGGAACCGTCGGCCCGAGGGGGGAAGCGAGCCAGAAGTTCGCG
GAAGTGCTTGAAGAAACGTTTCAAGTTCCCGTCGTGCTTTGGGACGAGCGCCTCTCGACAATGGCGGCCGAAAGAATGCT
GATTTCAGCAGATGTAAGCAGGCAAAAGAGAAAAAAAGTAATTGATAAAATGGCGGCCGTGATGATCCTTCAAGGATATC
TCGACAGCCTAAACTCATGA

Upstream 100 bases:

>100_bases
TCGAGATGCACGCAACCTGATTCGGAAAATAGAAAGAGACGAGATAATCGAAGAATTGGTTAAATCGTACTTAGAACAGC
ATAAAGAGGCGTAAACAAGC

Downstream 100 bases:

>100_bases
GGTGATTACGATGGAACACGGAGAAAAAAACATTACAATTGTAGACGATAAAGGGAATGAACAGCTGTGTGAAGTGCTCT
TTACATTTGACAGCGATCAG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MRILGLDLGSKTLGVALSDEMGWTAQGIETIKIDEAGGDYGLNRLAELTKDYVIDKIVLGFPKNMNGTVGPRGEASQKFA
EVLEETFQVPVVLWDERLSTMAAERMLISADVSRQKRKKVIDKMAAVMILQGYLDSLNS

Sequences:

>Translated_139_residues
MRILGLDLGSKTLGVALSDEMGWTAQGIETIKIDEAGGDYGLNRLAELTKDYVIDKIVLGFPKNMNGTVGPRGEASQKFA
EVLEETFQVPVVLWDERLSTMAAERMLISADVSRQKRKKVIDKMAAVMILQGYLDSLNS
>Mature_139_residues
MRILGLDLGSKTLGVALSDEMGWTAQGIETIKIDEAGGDYGLNRLAELTKDYVIDKIVLGFPKNMNGTVGPRGEASQKFA
EVLEETFQVPVVLWDERLSTMAAERMLISADVSRQKRKKVIDKMAAVMILQGYLDSLNS

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=133, Percent_Identity=35.3383458646617, Blast_Score=80, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_BACLD (Q65GS7)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_080011.1
- RefSeq:   YP_092430.1
- ProteinModelPortal:   Q65GS7
- SMR:   Q65GS7
- STRING:   Q65GS7
- EnsemblBacteria:   EBBACT00000054498
- EnsemblBacteria:   EBBACT00000062118
- GeneID:   3027766
- GeneID:   3098145
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi02867
- KEGG:   bli:BL02031
- NMPDR:   fig|279010.5.peg.3196
- eggNOG:   COG0816
- GeneTree:   EBGT00050000001393
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- ProtClustDB:   PRK00109
- BioCyc:   BLIC279010-1:BLI02867-MONOMER
- BioCyc:   BLIC279010:BL02031-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 15293; Mature: 15293

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILGLDLGSKTLGVALSDEMGWTAQGIETIKIDEAGGDYGLNRLAELTKDYVIDKIVLG
CEEEECCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
FPKNMNGTVGPRGEASQKFAEVLEETFQVPVVLWDERLSTMAAERMLISADVSRQKRKKV
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDKMAAVMILQGYLDSLNS
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRILGLDLGSKTLGVALSDEMGWTAQGIETIKIDEAGGDYGLNRLAELTKDYVIDKIVLG
CEEEECCCCCCCEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHC
FPKNMNGTVGPRGEASQKFAEVLEETFQVPVVLWDERLSTMAAERMLISADVSRQKRKKV
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
IDKMAAVMILQGYLDSLNS
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA