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The map label for this gene is yybE [H]

Identifier: 52786579

GI number: 52786579

Start: 2730300

End: 2731199

Strand: Reverse

Name: yybE [H]

Synonym: BLi02845

Alternate gene names: 52786579

Gene position: 2731199-2730300 (Counterclockwise)

Preceding gene: 52786582

Following gene: 52786578

Centisome position: 64.68

GC content: 50.56

Gene sequence:

>900_bases
TTGGAACTCTATCAAATTGACCATTTTATTGCCGTGAGCAGGCATAAACACTTTACAAAAGCAGCCTTGGAACAACGGAT
TTCCCAGCCGGCTTTGAGCAGGTCGATCAAAAAGCTTGAAGAAGAATTGGGCGTCCCGCTGTTTATTCGAAAAACAAAAT
CGATCCGCCTGACAAAGTACGGCGAGCAGTTCCTCATCAAAGCGAAGCAGGCCCGCCTTGCCCTTGACGAAGGCGTTCAG
CAAATCAGGGAAAGCGTCAATCCGAATGCCGGGGAAATCTCGGTATCATTTTTGCATACGCTTGGTTCGCGGCTCATGCC
GCAGCTGATTGCCGAATTTAAAAAGAAATACCCGAATGTTGCTTTCCGTCTGTATCAGGCCGCAAATGAACATCTTCAGC
ACATGGTGGAGACGGGCGAAGCTGATATCTGCCTCAGCTCTCCGCCGCTTCCAAACGAGCATCTTGAATGGACGGTGTTG
GATACTGAGCCGCTTTATCTGGTGCTTCCAGCCGACCACCCGCTTGCAGATCGGAAAGAAGTCGCGATCCGGTCGATTGC
ACACGAAGACTTTGTCTGTTTTAAGCCGGGCTATGGTCTTCGATATGTGTTTGATCAAATGTGCCGGGGACTGTCCATCA
GCCCGAAGCTTGCTTTTGAAGGGGAAGAAGTGTCGACGATTTTGGGACTAGTATCAGCAGGGCTCGGTGTAGCAATCCTG
CCGAAAACGGCGGAGCACGTCCATTCTCCAGTGGCATTTTGCCGAGTGTCAGACTACCGTTCTGAGAGGACGATCGGTCT
CGCCGTCCTGAAAGACCATTATTTGTCGCCGGCGGCACGCAACTTTAAAGAATTTGTAATTGAATACTATCGCCGGAACG
AACGGTCTGATCAGCCGTAA

Upstream 100 bases:

>100_bases
ATGACAATCTATGTTTCATGGTACGCTTTCATTTGTGATGTGTCTAATTTATAATAACTATCATCATCATGCGTTTTATT
TATGAAGGAGCGGATGAGCA

Downstream 100 bases:

>100_bases
CTCAAATAAGGACTTCTCAAGATGACAAATATCCTGTATATTGATAATGATAATTATTATCAATTGGAGGATTAAATATG
ACGAAAAAGCAATATTCTTA

Product: YybE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MELYQIDHFIAVSRHKHFTKAALEQRISQPALSRSIKKLEEELGVPLFIRKTKSIRLTKYGEQFLIKAKQARLALDEGVQ
QIRESVNPNAGEISVSFLHTLGSRLMPQLIAEFKKKYPNVAFRLYQAANEHLQHMVETGEADICLSSPPLPNEHLEWTVL
DTEPLYLVLPADHPLADRKEVAIRSIAHEDFVCFKPGYGLRYVFDQMCRGLSISPKLAFEGEEVSTILGLVSAGLGVAIL
PKTAEHVHSPVAFCRVSDYRSERTIGLAVLKDHYLSPAARNFKEFVIEYYRRNERSDQP

Sequences:

>Translated_299_residues
MELYQIDHFIAVSRHKHFTKAALEQRISQPALSRSIKKLEEELGVPLFIRKTKSIRLTKYGEQFLIKAKQARLALDEGVQ
QIRESVNPNAGEISVSFLHTLGSRLMPQLIAEFKKKYPNVAFRLYQAANEHLQHMVETGEADICLSSPPLPNEHLEWTVL
DTEPLYLVLPADHPLADRKEVAIRSIAHEDFVCFKPGYGLRYVFDQMCRGLSISPKLAFEGEEVSTILGLVSAGLGVAIL
PKTAEHVHSPVAFCRVSDYRSERTIGLAVLKDHYLSPAARNFKEFVIEYYRRNERSDQP
>Mature_299_residues
MELYQIDHFIAVSRHKHFTKAALEQRISQPALSRSIKKLEEELGVPLFIRKTKSIRLTKYGEQFLIKAKQARLALDEGVQ
QIRESVNPNAGEISVSFLHTLGSRLMPQLIAEFKKKYPNVAFRLYQAANEHLQHMVETGEADICLSSPPLPNEHLEWTVL
DTEPLYLVLPADHPLADRKEVAIRSIAHEDFVCFKPGYGLRYVFDQMCRGLSISPKLAFEGEEVSTILGLVSAGLGVAIL
PKTAEHVHSPVAFCRVSDYRSERTIGLAVLKDHYLSPAARNFKEFVIEYYRRNERSDQP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=297, Percent_Identity=33.3333333333333, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI157672245, Length=283, Percent_Identity=30.3886925795053, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=30.2405498281787, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1788887, Length=297, Percent_Identity=27.6094276094276, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1790399, Length=274, Percent_Identity=27.7372262773723, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1788748, Length=286, Percent_Identity=26.9230769230769, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1787530, Length=251, Percent_Identity=26.2948207171315, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI2367136, Length=259, Percent_Identity=25.8687258687259, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788296, Length=239, Percent_Identity=25.5230125523013, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1790208, Length=291, Percent_Identity=25.085910652921, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1787806, Length=243, Percent_Identity=25.5144032921811, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789204, Length=248, Percent_Identity=25, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787601, Length=147, Percent_Identity=30.6122448979592, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790262, Length=242, Percent_Identity=25.6198347107438, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081904, Length=177, Percent_Identity=28.8135593220339, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788297, Length=252, Percent_Identity=23.8095238095238, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788481, Length=245, Percent_Identity=26.9387755102041, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789173, Length=209, Percent_Identity=25.3588516746411, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1789506, Length=236, Percent_Identity=23.3050847457627, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33967; Mature: 33967

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELYQIDHFIAVSRHKHFTKAALEQRISQPALSRSIKKLEEELGVPLFIRKTKSIRLTKY
CCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEHH
GEQFLIKAKQARLALDEGVQQIRESVNPNAGEISVSFLHTLGSRLMPQLIAEFKKKYPNV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCHH
AFRLYQAANEHLQHMVETGEADICLSSPPLPNEHLEWTVLDTEPLYLVLPADHPLADRKE
HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCCCHHH
VAIRSIAHEDFVCFKPGYGLRYVFDQMCRGLSISPKLAFEGEEVSTILGLVSAGLGVAIL
HHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHCCCEEEC
PKTAEHVHSPVAFCRVSDYRSERTIGLAVLKDHYLSPAARNFKEFVIEYYRRNERSDQP
CCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MELYQIDHFIAVSRHKHFTKAALEQRISQPALSRSIKKLEEELGVPLFIRKTKSIRLTKY
CCCEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCEEEEHH
GEQFLIKAKQARLALDEGVQQIRESVNPNAGEISVSFLHTLGSRLMPQLIAEFKKKYPNV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCHH
AFRLYQAANEHLQHMVETGEADICLSSPPLPNEHLEWTVLDTEPLYLVLPADHPLADRKE
HHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCEEEEECCCCEEEEEECCCCCCCHHH
VAIRSIAHEDFVCFKPGYGLRYVFDQMCRGLSISPKLAFEGEEVSTILGLVSAGLGVAIL
HHHHHHHHCCCEEECCCCCHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHCCCEEEC
PKTAEHVHSPVAFCRVSDYRSERTIGLAVLKDHYLSPAARNFKEFVIEYYRRNERSDQP
CCCHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]