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The map label for this gene is yqxC [H]

Identifier: 52786335

GI number: 52786335

Start: 2516817

End: 2517662

Strand: Reverse

Name: yqxC [H]

Synonym: BLi02597

Alternate gene names: 52786335

Gene position: 2517662-2516817 (Counterclockwise)

Preceding gene: 52786336

Following gene: 52786334

Centisome position: 59.62

GC content: 50.71

Gene sequence:

>846_bases
ATGACAGGAAAAAAAGAACGGCTCGACGTTTTATTAGTAGAAAGAGGGTTAATGGAAACGCGGGAAAAAGCGAAAAGAGC
CATCATGGCCGGCATTGTCTATACGAATGAAAACAGACTGGACAAGCCGGGCGAAAAGGTCGACCGCACGATCCCGCTGA
CCGTTAAAGGAAACCCGTTAAAATACGTCTCAAGAGGCGGATTAAAACTTGAAAAAGCATTAAAGGAGTTTCAGCTCTCC
GTTCAAGGCAAGCTGATGATTGACATCGGCTCGTCCACCGGCGGCTTTACAGACTGTGCGCTGCAAAACGGCGCTCTTTG
CTCATATGCCGTTGATGTCGGTTATAATCAGCTCGCCTGGAAGCTGAGGCAGGATGAGCGGGTTGTTGTGATGGAACGCA
CCAATTTCCGGTATTGCACACCTGCCGATTTTACGGAAGGGCTGCCGGAGTTCGCGACGGTCGATGTCTCTTTTATCTCA
CTGAAAATCATCCTCCCTGTGCTGAAGAACATTTTAGTGCCGGGAAGCGACTGCATCGCTCTCGTCAAACCGCAGTTTGA
AGCAGGGCGGGAATCCGTCGGGAAAAAAGGGATCGTCCGCGATCCCCTCGTCCATAAAGCTGTGCTTGATGACATCAGCC
GGTTTGCGGCTCGAGAAGGATACGACTGCCGAAACGCCTCGTTTTCTCCGATTACCGGCGGCGACGGCAACATCGAATTC
CTTCTCCATTTGCATTGGGACGGAGAGGCGCAATCCGGAACGCCGATAGCGGAAGAAACGATCAATCAAATTGTCGAAGA
GGCTCACAAGACATTAAAAGCGAAAAAACCGGATCAGCGTGATTAA

Upstream 100 bases:

>100_bases
GCGTCGCCAAGCTTCTGGAAGAGATCGGAATGACAAAAGAAGACGTCATCAGACGAATAAGACTTTTGACGCCCGTAAAG
ACTCATAAAGGAATTGGATC

Downstream 100 bases:

>100_bases
AAACCCTTGCAGGGCCGTACGGCGAATGCGAGGGTTGGCCGGCACGCAAAAAGGAATAATAGTGGGCTATTATTCCTTTT
TTACTGCAAACATGTACTTT

Product: YqxC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MTGKKERLDVLLVERGLMETREKAKRAIMAGIVYTNENRLDKPGEKVDRTIPLTVKGNPLKYVSRGGLKLEKALKEFQLS
VQGKLMIDIGSSTGGFTDCALQNGALCSYAVDVGYNQLAWKLRQDERVVVMERTNFRYCTPADFTEGLPEFATVDVSFIS
LKIILPVLKNILVPGSDCIALVKPQFEAGRESVGKKGIVRDPLVHKAVLDDISRFAAREGYDCRNASFSPITGGDGNIEF
LLHLHWDGEAQSGTPIAEETINQIVEEAHKTLKAKKPDQRD

Sequences:

>Translated_281_residues
MTGKKERLDVLLVERGLMETREKAKRAIMAGIVYTNENRLDKPGEKVDRTIPLTVKGNPLKYVSRGGLKLEKALKEFQLS
VQGKLMIDIGSSTGGFTDCALQNGALCSYAVDVGYNQLAWKLRQDERVVVMERTNFRYCTPADFTEGLPEFATVDVSFIS
LKIILPVLKNILVPGSDCIALVKPQFEAGRESVGKKGIVRDPLVHKAVLDDISRFAAREGYDCRNASFSPITGGDGNIEF
LLHLHWDGEAQSGTPIAEETINQIVEEAHKTLKAKKPDQRD
>Mature_280_residues
TGKKERLDVLLVERGLMETREKAKRAIMAGIVYTNENRLDKPGEKVDRTIPLTVKGNPLKYVSRGGLKLEKALKEFQLSV
QGKLMIDIGSSTGGFTDCALQNGALCSYAVDVGYNQLAWKLRQDERVVVMERTNFRYCTPADFTEGLPEFATVDVSFISL
KIILPVLKNILVPGSDCIALVKPQFEAGRESVGKKGIVRDPLVHKAVLDDISRFAAREGYDCRNASFSPITGGDGNIEFL
LHLHWDGEAQSGTPIAEETINQIVEEAHKTLKAKKPDQRD

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 31120; Mature: 30989

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGKKERLDVLLVERGLMETREKAKRAIMAGIVYTNENRLDKPGEKVDRTIPLTVKGNPL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHCCEEEEEECCCCH
KYVSRGGLKLEKALKEFQLSVQGKLMIDIGSSTGGFTDCALQNGALCSYAVDVGYNQLAW
HHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHCCCCEEEEEECCCCHHHHH
KLRQDERVVVMERTNFRYCTPADFTEGLPEFATVDVSFISLKIILPVLKNILVPGSDCIA
EECCCCEEEEEECCCCCEECCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEE
LVKPQFEAGRESVGKKGIVRDPLVHKAVLDDISRFAAREGYDCRNASFSPITGGDGNIEF
EECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
LLHLHWDGEAQSGTPIAEETINQIVEEAHKTLKAKKPDQRD
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TGKKERLDVLLVERGLMETREKAKRAIMAGIVYTNENRLDKPGEKVDRTIPLTVKGNPL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHCCEEEEEECCCCH
KYVSRGGLKLEKALKEFQLSVQGKLMIDIGSSTGGFTDCALQNGALCSYAVDVGYNQLAW
HHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHCCCCEEEEEECCCCHHHHH
KLRQDERVVVMERTNFRYCTPADFTEGLPEFATVDVSFISLKIILPVLKNILVPGSDCIA
EECCCCEEEEEECCCCCEECCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEE
LVKPQFEAGRESVGKKGIVRDPLVHKAVLDDISRFAAREGYDCRNASFSPITGGDGNIEF
EECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
LLHLHWDGEAQSGTPIAEETINQIVEEAHKTLKAKKPDQRD
EEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]