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The map label for this gene is ydhQ [H]

Identifier: 52786297

GI number: 52786297

Start: 2478540

End: 2479253

Strand: Reverse

Name: ydhQ [H]

Synonym: BLi02559

Alternate gene names: 52786297

Gene position: 2479253-2478540 (Counterclockwise)

Preceding gene: 52786298

Following gene: 52786296

Centisome position: 58.71

GC content: 46.78

Gene sequence:

>714_bases
ATGAGAAAATACGAATATATTTCAAACGAAATGAGGAGGCGGATTCAGGAGGAATACTATCCGATTGATCAGCCCATACC
TGATGAGCTTTCTCTCGCCAAGGAATTTTCCTGCAGCAGAATGACGATGAAAAGAGCCCTCGATATTCTTGTGTCAGAAG
GCATGCTGTACCGCAAGCGCGGACACGGCACCTTCATTGTAAAATCATCGATTCAGCAGCTTCCCGTCAGTGTAACAGAC
CGCGAAAACCTTGGGCTGACCAAGCTTCTTGCCAACAAACAAATCGAAAGCCGCATCATTCAATTTGACGTCGAATTCCC
TTCAGATGAAGTGGCAAAGCAATTGTCAATCGAAAAGACCGTTCCGGTGTATCATATCATCAGGCTCAGAAAGGTTGAAG
GCGAACCGTATGTCATTGAAGAAACGTATATGCCTTCGAACGTCATCTCTGAATTAAATGAAGACGTCCTTCACGGCTCC
GTTTACCGGCACATCACCGAGACGCTGAAACTGACAATCGCCGGATCGCACCGGAAGATCAGGGCGGATAAGTCGAGTGC
ACTCGACCGAGAGTACTTGGAATGCGCCCCTGACGATCCGGTTCTTGAAGTCGAACAGGTCGCTTTTTTAAATACGGGGG
AACCGTTTGAATATTCTTTTGCAAGGCATCGCTATGATAAGTTTGTGTTTTCGAGCGTCCATATTCGGAAATGA

Upstream 100 bases:

>100_bases
GATGGTCAGTTGGGCCATCTTTTTATTTCCGCATTAAAACCGATATAATGATAAAGAAGGTGTTACAGGCTACAGAATCC
TTAGTAATGGTGGTTAAAAC

Downstream 100 bases:

>100_bases
AAAACCTGCATAACCGCGGGTTTTTTTGTTTTGTCATAGAATCTTCCAGCACGCTTGTCCTCCGAAGGGATTATGGACTA
ACATCGCTGTAGCGGACGAG

Product: YdhQ

Products: NA

Alternate protein names: Glucomannan utilization operon repressor; Glucomannan utilization protein R [H]

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MRKYEYISNEMRRRIQEEYYPIDQPIPDELSLAKEFSCSRMTMKRALDILVSEGMLYRKRGHGTFIVKSSIQQLPVSVTD
RENLGLTKLLANKQIESRIIQFDVEFPSDEVAKQLSIEKTVPVYHIIRLRKVEGEPYVIEETYMPSNVISELNEDVLHGS
VYRHITETLKLTIAGSHRKIRADKSSALDREYLECAPDDPVLEVEQVAFLNTGEPFEYSFARHRYDKFVFSSVHIRK

Sequences:

>Translated_237_residues
MRKYEYISNEMRRRIQEEYYPIDQPIPDELSLAKEFSCSRMTMKRALDILVSEGMLYRKRGHGTFIVKSSIQQLPVSVTD
RENLGLTKLLANKQIESRIIQFDVEFPSDEVAKQLSIEKTVPVYHIIRLRKVEGEPYVIEETYMPSNVISELNEDVLHGS
VYRHITETLKLTIAGSHRKIRADKSSALDREYLECAPDDPVLEVEQVAFLNTGEPFEYSFARHRYDKFVFSSVHIRK
>Mature_237_residues
MRKYEYISNEMRRRIQEEYYPIDQPIPDELSLAKEFSCSRMTMKRALDILVSEGMLYRKRGHGTFIVKSSIQQLPVSVTD
RENLGLTKLLANKQIESRIIQFDVEFPSDEVAKQLSIEKTVPVYHIIRLRKVEGEPYVIEETYMPSNVISELNEDVLHGS
VYRHITETLKLTIAGSHRKIRADKSSALDREYLECAPDDPVLEVEQVAFLNTGEPFEYSFARHRYDKFVFSSVHIRK

Specific function: Transcriptional repressor of the gmuBACDREFG operon which is involved in the uptake and degradation of glucomannan [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=218, Percent_Identity=28.4403669724771, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1786950, Length=237, Percent_Identity=27.8481012658228, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082252, Length=217, Percent_Identity=22.1198156682028, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788418, Length=205, Percent_Identity=27.3170731707317, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27649; Mature: 27649

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKYEYISNEMRRRIQEEYYPIDQPIPDELSLAKEFSCSRMTMKRALDILVSEGMLYRKR
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
GHGTFIVKSSIQQLPVSVTDRENLGLTKLLANKQIESRIIQFDVEFPSDEVAKQLSIEKT
CCCEEEEECCHHHCCCEECCCCCCCHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHCC
VPVYHIIRLRKVEGEPYVIEETYMPSNVISELNEDVLHGSVYRHITETLKLTIAGSHRKI
CHHHHHHHHHEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEE
RADKSSALDREYLECAPDDPVLEVEQVAFLNTGEPFEYSFARHRYDKFVFSSVHIRK
CCCHHHHHHHHHHHCCCCCCCEEHHHEEEECCCCCCHHHHHHHHHHHHHHHHEEECC
>Mature Secondary Structure
MRKYEYISNEMRRRIQEEYYPIDQPIPDELSLAKEFSCSRMTMKRALDILVSEGMLYRKR
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC
GHGTFIVKSSIQQLPVSVTDRENLGLTKLLANKQIESRIIQFDVEFPSDEVAKQLSIEKT
CCCEEEEECCHHHCCCEECCCCCCCHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHCC
VPVYHIIRLRKVEGEPYVIEETYMPSNVISELNEDVLHGSVYRHITETLKLTIAGSHRKI
CHHHHHHHHHEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEE
RADKSSALDREYLECAPDDPVLEVEQVAFLNTGEPFEYSFARHRYDKFVFSSVHIRK
CCCHHHHHHHHHHHCCCCCCCEEHHHEEEECCCCCCHHHHHHHHHHHHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]