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The map label for this gene is yodF [H]

Identifier: 52786022

GI number: 52786022

Start: 2235297

End: 2236778

Strand: Direct

Name: yodF [H]

Synonym: BLi02278

Alternate gene names: 52786022

Gene position: 2235297-2236778 (Clockwise)

Preceding gene: 52786021

Following gene: 52786023

Centisome position: 52.94

GC content: 49.33

Gene sequence:

>1482_bases
ATGCAGGGAAATCTAACAGCGCTCCTCATTACCGCCGGCATCATTTTGGCCGTAGTTTGTATCGGATTTATCGCCGGCAG
CAATAAACAGTCGCGGAAATCGGTTGAAGAATGGTCGGTCGGCGGAAGGCGGTTCGGCGGGCTGCTCGTCTGGTTTCTCG
TCGGCGCCGACTTGTATACAGCCTACACGTTTTTAGGATTGACAAGCACCGCTTTTACAAGCGGAAGCGTTGCTTTTTTC
GCGATCCCTTATTCGGTTTTGGCCTATTTTATCGCGTACTTTTTTCTGCCGAAGATTTGGAAGGTGGCGAAAGTACATCA
GCTGACGACGCTGGCCGATTACGCAAGGGAACGTTTCAGCAGCAAGCTGCTGTCTTCGCTTGTTGCCATTGTCGGCGTCT
TGATGCTGATCCCGTATATCTGCCTGCAGCTCAGCGGAATCCAGGATACGCTTCAAGTCGCGGGTACAGGGTTTATTAAC
GTCAATGCCGTCGTGATCATATCATTCATCCTTGTCGCGCTCTATACGTTTTTCAGCGGCATCAAAGGTCCTACATATAC
CGCCATTATTAAAGATATTTTAGTTTGGGTGATGATGCTGTTTATGGTCGTTTCGTTGCCGCTCATCCATTTTAACGGCT
GGACGCCGATGATTGACAAGCTTGCAAATGAAGCGCCGCATATGCTGACGATCCCTTCTGACGGACCGCGCGGGATCGCC
TGGTTCATCACGGCATCGATCGTTTCCGCGTTTGCCCTGTTCATGTGGGCCCATGCGGCGACAGGCGTCTTCACGGCGAA
CAGCGCGGATGCGCTCAGAAAAAACAGCATGTTTCTGCCGCTGTACAATATCGTATTGATCTTAGTCATTTTCTTAGGCT
TTATCGCATTTCTCGTACTTCCCGATGACATTAATCCGAGATTTGCCTTGCTGTATTTAATCCAAAGTTCCTACGGCGGC
GTCACGCAAGGATTCGCCTATTCAACAATTGCCCTGGCAAGTCTGATCCCGTGTTCGATCATGGCGATCGGGGCGTCTAA
TCTATTCGCCAACAATTTATACCGCGATTTGATCAATCCCCGCGTTTCGGGGCAAAAACTGACGATCATTACGCGCTCAA
TGGTATTTGTCGTCATCGGCCTGGCCCTTTTATTTGGAATGCTGTTCCCCGCAGCGCTTGTCACGCTTCAGCTTCTCGGC
GTTTCAGGCATGGTGCAGATATTCCCGGCCATCGTCATCAGCCTGTTCTGGAAAAACCAGACGAAGGAAGCGACGATCAT
CGGTCTTCTCATCGGCCTTGCCGTTACATTTACCGTTTATTTGACAGGGGCCACTTTCGGCATTTACGAAGGATTCTGGG
GCCTTGCAGCCAACCTTTTGACTGTTGTCTTGTTGAATCCGTTTTTTGTGAAAAATGTAAAACACAATTCTGTGATCAAC
TATTTGTTTCATACTAAGAAGAATGTGCAAAAAAGCGCCTGA

Upstream 100 bases:

>100_bases
TTCCGTTTTTTCATTTTTGGCTGGTGCTGTGGATTGTGCTGACACCGCTGATCACATTTGCGATTTACAGATTTGAGAAA
AGAAACGGAGGTTATGAGTG

Downstream 100 bases:

>100_bases
TCACCAAAAAACCCTTGTGCTCCGTGTGGAGAGACCCAAATAAATGAGACAAGGAAAAAACACCCCCTGAATCGTATTAA
TACAATATGATTCTTAGGAG

Product: YodF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 493

Protein sequence:

>493_residues
MQGNLTALLITAGIILAVVCIGFIAGSNKQSRKSVEEWSVGGRRFGGLLVWFLVGADLYTAYTFLGLTSTAFTSGSVAFF
AIPYSVLAYFIAYFFLPKIWKVAKVHQLTTLADYARERFSSKLLSSLVAIVGVLMLIPYICLQLSGIQDTLQVAGTGFIN
VNAVVIISFILVALYTFFSGIKGPTYTAIIKDILVWVMMLFMVVSLPLIHFNGWTPMIDKLANEAPHMLTIPSDGPRGIA
WFITASIVSAFALFMWAHAATGVFTANSADALRKNSMFLPLYNIVLILVIFLGFIAFLVLPDDINPRFALLYLIQSSYGG
VTQGFAYSTIALASLIPCSIMAIGASNLFANNLYRDLINPRVSGQKLTIITRSMVFVVIGLALLFGMLFPAALVTLQLLG
VSGMVQIFPAIVISLFWKNQTKEATIIGLLIGLAVTFTVYLTGATFGIYEGFWGLAANLLTVVLLNPFFVKNVKHNSVIN
YLFHTKKNVQKSA

Sequences:

>Translated_493_residues
MQGNLTALLITAGIILAVVCIGFIAGSNKQSRKSVEEWSVGGRRFGGLLVWFLVGADLYTAYTFLGLTSTAFTSGSVAFF
AIPYSVLAYFIAYFFLPKIWKVAKVHQLTTLADYARERFSSKLLSSLVAIVGVLMLIPYICLQLSGIQDTLQVAGTGFIN
VNAVVIISFILVALYTFFSGIKGPTYTAIIKDILVWVMMLFMVVSLPLIHFNGWTPMIDKLANEAPHMLTIPSDGPRGIA
WFITASIVSAFALFMWAHAATGVFTANSADALRKNSMFLPLYNIVLILVIFLGFIAFLVLPDDINPRFALLYLIQSSYGG
VTQGFAYSTIALASLIPCSIMAIGASNLFANNLYRDLINPRVSGQKLTIITRSMVFVVIGLALLFGMLFPAALVTLQLLG
VSGMVQIFPAIVISLFWKNQTKEATIIGLLIGLAVTFTVYLTGATFGIYEGFWGLAANLLTVVLLNPFFVKNVKHNSVIN
YLFHTKKNVQKSA
>Mature_493_residues
MQGNLTALLITAGIILAVVCIGFIAGSNKQSRKSVEEWSVGGRRFGGLLVWFLVGADLYTAYTFLGLTSTAFTSGSVAFF
AIPYSVLAYFIAYFFLPKIWKVAKVHQLTTLADYARERFSSKLLSSLVAIVGVLMLIPYICLQLSGIQDTLQVAGTGFIN
VNAVVIISFILVALYTFFSGIKGPTYTAIIKDILVWVMMLFMVVSLPLIHFNGWTPMIDKLANEAPHMLTIPSDGPRGIA
WFITASIVSAFALFMWAHAATGVFTANSADALRKNSMFLPLYNIVLILVIFLGFIAFLVLPDDINPRFALLYLIQSSYGG
VTQGFAYSTIALASLIPCSIMAIGASNLFANNLYRDLINPRVSGQKLTIITRSMVFVVIGLALLFGMLFPAALVTLQLLG
VSGMVQIFPAIVISLFWKNQTKEATIIGLLIGLAVTFTVYLTGATFGIYEGFWGLAANLLTVVLLNPFFVKNVKHNSVIN
YLFHTKKNVQKSA

Specific function: Unknown

COG id: COG0591

COG function: function code ER; Na+/proline symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001734 [H]

Pfam domain/function: PF00474 SSF [H]

EC number: NA

Molecular weight: Translated: 53788; Mature: 53788

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50283 NA_SOLUT_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGNLTALLITAGIILAVVCIGFIAGSNKQSRKSVEEWSVGGRRFGGLLVWFLVGADLYT
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
AYTFLGLTSTAFTSGSVAFFAIPYSVLAYFIAYFFLPKIWKVAKVHQLTTLADYARERFS
HHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKLLSSLVAIVGVLMLIPYICLQLSGIQDTLQVAGTGFINVNAVVIISFILVALYTFFSG
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHCC
IKGPTYTAIIKDILVWVMMLFMVVSLPLIHFNGWTPMIDKLANEAPHMLTIPSDGPRGIA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHCCCCCCEEECCCCCCCCHH
WFITASIVSAFALFMWAHAATGVFTANSADALRKNSMFLPLYNIVLILVIFLGFIAFLVL
HHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
PDDINPRFALLYLIQSSYGGVTQGFAYSTIALASLIPCSIMAIGASNLFANNLYRDLINP
CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCC
RVSGQKLTIITRSMVFVVIGLALLFGMLFPAALVTLQLLGVSGMVQIFPAIVISLFWKNQ
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
TKEATIIGLLIGLAVTFTVYLTGATFGIYEGFWGLAANLLTVVLLNPFFVKNVKHNSVIN
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
YLFHTKKNVQKSA
HHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]