Click here to switch to the map view.

The map label for this gene is yobS [H]

Identifier: 52785943

GI number: 52785943

Start: 2156738

End: 2157310

Strand: Reverse

Name: yobS [H]

Synonym: BLi02194

Alternate gene names: 52785943

Gene position: 2157310-2156738 (Counterclockwise)

Preceding gene: 52785944

Following gene: 52785942

Centisome position: 51.09

GC content: 47.12

Gene sequence:

>573_bases
TTGTCTCCGCGAATCGGTTTGAATAAAGACGCAGTATTGGAAGCTGCTGCAGCTCTGGCTGATGAGGAAGGCATTCATGA
AGTGACGCTTGCTTCACTTTCCAAAAGGCTGAATGTCAAATCTCCGTCTCTGTACAATCATATAAAAGGATTGAACGACT
TACGGAAGGAACTCGCACTTTACGGCTTGACGATTCTTTATGAAAACATGGCTTCGGCTATCCAGAGAGCCGAAGAGGAT
CAGGCTGTCAGCCAAATGGCTCATGCCTATCTCGCTTTTGCCAAAAACAGACCGGGGCTTTATGAAGCAACTTTTATTGC
AATGCCCGATGAAGATGGACGGCTTGACGAGGCTGGAGACAGAGTCCTCGCCTTGGTGCTTTCCGTTCTGAAAGACTATC
ATTTAGATGATGAAGCCGCGATTCATGCGGTCAGAGGCTTGAGAAGCATCCTGCATGGATTTGCCGCACTCAGGCAACAC
GATGCGTTCGGTCTTCCTTATGATGTAGAAGAAAGTCTTGATCTGACAATCCGCGTCTTCTTAAAAGGCATTGCTGTCTA
TCAGACCGAATAA

Upstream 100 bases:

>100_bases
GCCGCCGGCCACGGCGATCTTGTCCATGATCCGGCTCAAGCGATGAAAAAAGCGGTAAACGAAGCATACATCAAATTAAA
CAGGAAAGGATGAAGGAATC

Downstream 100 bases:

>100_bases
ACAAGAGGATTTTTCTTAATTGTTTACATTTTTTCGAAAATTTAGTATGATTGTCGTATGGCTCTTCCATTTTTTGAGTC
ATAGGTATGAGAAGGCTTAA

Product: YobS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MSPRIGLNKDAVLEAAAALADEEGIHEVTLASLSKRLNVKSPSLYNHIKGLNDLRKELALYGLTILYENMASAIQRAEED
QAVSQMAHAYLAFAKNRPGLYEATFIAMPDEDGRLDEAGDRVLALVLSVLKDYHLDDEAAIHAVRGLRSILHGFAALRQH
DAFGLPYDVEESLDLTIRVFLKGIAVYQTE

Sequences:

>Translated_190_residues
MSPRIGLNKDAVLEAAAALADEEGIHEVTLASLSKRLNVKSPSLYNHIKGLNDLRKELALYGLTILYENMASAIQRAEED
QAVSQMAHAYLAFAKNRPGLYEATFIAMPDEDGRLDEAGDRVLALVLSVLKDYHLDDEAAIHAVRGLRSILHGFAALRQH
DAFGLPYDVEESLDLTIRVFLKGIAVYQTE
>Mature_189_residues
SPRIGLNKDAVLEAAAALADEEGIHEVTLASLSKRLNVKSPSLYNHIKGLNDLRKELALYGLTILYENMASAIQRAEEDQ
AVSQMAHAYLAFAKNRPGLYEATFIAMPDEDGRLDEAGDRVLALVLSVLKDYHLDDEAAIHAVRGLRSILHGFAALRQHD
AFGLPYDVEESLDLTIRVFLKGIAVYQTE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 20960; Mature: 20829

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPRIGLNKDAVLEAAAALADEEGIHEVTLASLSKRLNVKSPSLYNHIKGLNDLRKELAL
CCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
YGLTILYENMASAIQRAEEDQAVSQMAHAYLAFAKNRPGLYEATFIAMPDEDGRLDEAGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHH
RVLALVLSVLKDYHLDDEAAIHAVRGLRSILHGFAALRQHDAFGLPYDVEESLDLTIRVF
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
LKGIAVYQTE
HHHHHHHCCC
>Mature Secondary Structure 
SPRIGLNKDAVLEAAAALADEEGIHEVTLASLSKRLNVKSPSLYNHIKGLNDLRKELAL
CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
YGLTILYENMASAIQRAEEDQAVSQMAHAYLAFAKNRPGLYEATFIAMPDEDGRLDEAGD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHH
RVLALVLSVLKDYHLDDEAAIHAVRGLRSILHGFAALRQHDAFGLPYDVEESLDLTIRVF
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
LKGIAVYQTE
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]