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The map label for this gene is yvmB [H]

Identifier: 52785937

GI number: 52785937

Start: 2151505

End: 2151996

Strand: Reverse

Name: yvmB [H]

Synonym: BLi02188

Alternate gene names: 52785937

Gene position: 2151996-2151505 (Counterclockwise)

Preceding gene: 52785939

Following gene: 52785936

Centisome position: 50.96

GC content: 40.45

Gene sequence:

>492_bases
TTGACTATGTCTGAACTGACAAAACAGCTGATCTATGATATGTATGTTAAACTCCTGCACCTGAACGAACAAAAAGCGGA
TACAGATCTCAAGGCATTTTTAAAGCAGGCGGCAGAATCTGATGTTAAACGGCTCCCGGGGAATATGACTACCATCCATG
TCATCAGCTGTATCGGTCATGATGAACCGATCAACAACACCGGCATCGCAAAAAAAATGAATTTATCAAAAGCAAATATT
ACAAAAATCAGTTCAAAGCTGTTAAAAGAAGGCCTCATCAAACGGTTTCAATTGACGGACAACAAAAAAGAGATATACTT
CAGGCTGACGCCCAGCGGAAAACAAGTGTTTGAGCTTCATGAAAAGCTCCATCAGCAAAAAGCGGATCAGTTTAGCAGAT
TTCTCGATTCGTTTTCAACAGCAGAACAGGGAGCGATTTTGAAATTCCTTCAAGGGCTGACGTTTATGACAGAAACGGAT
AAGAAGCATTAA

Upstream 100 bases:

>100_bases
CATTTGTTATCTGATTTCACCTTATCATAATATTGACAAATCCTGAAATAAACTATTAAAATATTTTGTTAACCGGAAAA
TAAAAAGAAGGGACTGTCCA

Downstream 100 bases:

>100_bases
TTCAATCTAACAATAATATTATTATGTAAACTTAAAAATCTATGGCTGAGAGAAGAAAATCGATTGACAAGAAATACTTT
CCATATTATAGTTAAACCAT

Product: YvmB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 162

Protein sequence:

>163_residues
MTMSELTKQLIYDMYVKLLHLNEQKADTDLKAFLKQAAESDVKRLPGNMTTIHVISCIGHDEPINNTGIAKKMNLSKANI
TKISSKLLKEGLIKRFQLTDNKKEIYFRLTPSGKQVFELHEKLHQQKADQFSRFLDSFSTAEQGAILKFLQGLTFMTETD
KKH

Sequences:

>Translated_163_residues
MTMSELTKQLIYDMYVKLLHLNEQKADTDLKAFLKQAAESDVKRLPGNMTTIHVISCIGHDEPINNTGIAKKMNLSKANI
TKISSKLLKEGLIKRFQLTDNKKEIYFRLTPSGKQVFELHEKLHQQKADQFSRFLDSFSTAEQGAILKFLQGLTFMTETD
KKH
>Mature_162_residues
TMSELTKQLIYDMYVKLLHLNEQKADTDLKAFLKQAAESDVKRLPGNMTTIHVISCIGHDEPINNTGIAKKMNLSKANIT
KISSKLLKEGLIKRFQLTDNKKEIYFRLTPSGKQVFELHEKLHQQKADQFSRFLDSFSTAEQGAILKFLQGLTFMTETDK
KH

Specific function: Involved in protein secretion [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18689; Mature: 18558

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMSELTKQLIYDMYVKLLHLNEQKADTDLKAFLKQAAESDVKRLPGNMTTIHVISCIGH
CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
DEPINNTGIAKKMNLSKANITKISSKLLKEGLIKRFQLTDNKKEIYFRLTPSGKQVFELH
CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHH
EKLHQQKADQFSRFLDSFSTAEQGAILKFLQGLTFMTETDKKH
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TMSELTKQLIYDMYVKLLHLNEQKADTDLKAFLKQAAESDVKRLPGNMTTIHVISCIGH
CHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC
DEPINNTGIAKKMNLSKANITKISSKLLKEGLIKRFQLTDNKKEIYFRLTPSGKQVFELH
CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHH
EKLHQQKADQFSRFLDSFSTAEQGAILKFLQGLTFMTETDKKH
HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]