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The map label for this gene is yndD [H]

Identifier: 52785930

GI number: 52785930

Start: 2142360

End: 2143928

Strand: Reverse

Name: yndD [H]

Synonym: BLi02181

Alternate gene names: 52785930

Gene position: 2143928-2142360 (Counterclockwise)

Preceding gene: 52785931

Following gene: 52785929

Centisome position: 50.77

GC content: 47.74

Gene sequence:

>1569_bases
ATGAGATGGTGGAAAGCAAAAACGCGAAGAATGATACAGTCGTCCAACAAGCCGGATAAACCTAAAAATGAAGTGCCGTC
TGTGGAGTCAACTGGGTATTTTACCGGCGATTTTGATCACGACTTGAAACTGGCCAAAACGGCTATGGAGAATAACTCAG
ACGTTCATTTCCGCGAATTCAACTTAGGGCGCACCGGCATCCGCGCGGCGATTGTATTTGTCGAAATGCTTGCGGATCAA
GACCTGATTGACAAGCATATTATGAAATCCCTTATGGATGATTTTTCCAAAGAATATAAAGTTGAACTTTCTTCATTAAG
CAGCAATGTGACCGACTTAATTAAAAAGCAAATTTTATCAATTAGCGGCGTATCAGAGGTAAACCATGTCAACGAAGTGG
TGCCCGAAGTGTTATCCGGTGCGGCCATGCTGCTGATCGACGGTTCAGCGGAAGTTTTACTGCTGGGAACTGTTAAAAGA
AATACAAGGAACATTGAAGAGCCCGTATCAGAATCTTTGGTAAGAGGCGCGCGCGTCGGCTTTACAGAAACGATCGGCAC
CAATACAGCCCTTTTGAGGCAGCACGGCAAAAATCAAAACTTGTCTATGGTTCAATTTCAAGTTGGGAAGCGAGCCGTCA
AAAATCTTGTCGTCGCTTATATCAAAGACATTGCGGAACCAGGGCTGGTGGAAGAAGTCAAAAAAAGAATCGAAAAGATT
GATATAGATGATGTCCTTGAATCAGGTTTTGTCGAACAGCTGATCGAAGACAATTATCTCAGTCCATTTCCGCAGGTGCA
AAGCACTGAACGTCTTGACAGGGTAATGAGTGCGTTAATGGAGGGAAGAGTGGCCATTTTATTGGACGGAACGCCTTTTG
TTTTAATCGTTCCGGTTACATTCAGCATGCTCCTCCAATCGCCCGAGGATTATTATGAACGCTGGCTGCCGAGTTCCCTG
ATCCGCATCATGCGAATCGGCGCAGCCATGATCTCGCTGCTTGGGCCGGCTCTATATATTTCCTTTATTTCGTTTCATCC
CGGGCTGATTCCGAGTGAACTTGCGATTTCCATTACCGGAACGAGGGTAGGTGTGCCTTTTCCATCGCTGATTGAAGCGC
TCATTATGGAAGTGGCAATTGAAATTTTGCGCGAGGCCGGCCTGCGGCTTCCAAAACCAATCGGTCCCGCGATGGGAATC
GTCGGCGGTATCATCATCGGGGAGGCTGCCGTGCAGGCAGGCATCGTCAGCCCGATTATGGTCATCGTCGTTGCCGTCAC
CGCGATTTCTTCATTTGCGATTCCTCAATACAGCGCCGGCATTTCGCTGCGCATGCTGAGATTTGTAGCGATGTTTTGTG
CAGCCACGTTCGGTTTGTACGGGGTGATTATGTTTTTCCTCATGCTTGCCAGCCACGCGGTGAAGCTGAAAAGCTTTGGC
GTTCCTTATGCGAGCCCTGCCGTTCCTTATCGTTTGCGCGATTGGAAAGACTTCATCGTTCGCATGCCGATACAGATGAT
GAAAAAACGGCCGAAGCTGTTAAAAACAGACGATTCGACACGCCAGTAG

Upstream 100 bases:

>100_bases
ACTGGCTGGTCCTGATGCAGGCTTTTTTTGTCTTTTTTGTCCCGTTTGCCATATCAAAAGTATTTTTGTGGCTTCGCACG
GCAGGGGATGAGTGAGTGGC

Downstream 100 bases:

>100_bases
CATAGAAAGGAGGGAAACGCTTATGATGGTCAGGCACGAAGAGCGCATCACCACTTCGCAAACAGCAGTTCTCATCACCA
ATTTCCTGCTTGGGACAGGG

Product: YndD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 522; Mature: 522

Protein sequence:

>522_residues
MRWWKAKTRRMIQSSNKPDKPKNEVPSVESTGYFTGDFDHDLKLAKTAMENNSDVHFREFNLGRTGIRAAIVFVEMLADQ
DLIDKHIMKSLMDDFSKEYKVELSSLSSNVTDLIKKQILSISGVSEVNHVNEVVPEVLSGAAMLLIDGSAEVLLLGTVKR
NTRNIEEPVSESLVRGARVGFTETIGTNTALLRQHGKNQNLSMVQFQVGKRAVKNLVVAYIKDIAEPGLVEEVKKRIEKI
DIDDVLESGFVEQLIEDNYLSPFPQVQSTERLDRVMSALMEGRVAILLDGTPFVLIVPVTFSMLLQSPEDYYERWLPSSL
IRIMRIGAAMISLLGPALYISFISFHPGLIPSELAISITGTRVGVPFPSLIEALIMEVAIEILREAGLRLPKPIGPAMGI
VGGIIIGEAAVQAGIVSPIMVIVVAVTAISSFAIPQYSAGISLRMLRFVAMFCAATFGLYGVIMFFLMLASHAVKLKSFG
VPYASPAVPYRLRDWKDFIVRMPIQMMKKRPKLLKTDDSTRQ

Sequences:

>Translated_522_residues
MRWWKAKTRRMIQSSNKPDKPKNEVPSVESTGYFTGDFDHDLKLAKTAMENNSDVHFREFNLGRTGIRAAIVFVEMLADQ
DLIDKHIMKSLMDDFSKEYKVELSSLSSNVTDLIKKQILSISGVSEVNHVNEVVPEVLSGAAMLLIDGSAEVLLLGTVKR
NTRNIEEPVSESLVRGARVGFTETIGTNTALLRQHGKNQNLSMVQFQVGKRAVKNLVVAYIKDIAEPGLVEEVKKRIEKI
DIDDVLESGFVEQLIEDNYLSPFPQVQSTERLDRVMSALMEGRVAILLDGTPFVLIVPVTFSMLLQSPEDYYERWLPSSL
IRIMRIGAAMISLLGPALYISFISFHPGLIPSELAISITGTRVGVPFPSLIEALIMEVAIEILREAGLRLPKPIGPAMGI
VGGIIIGEAAVQAGIVSPIMVIVVAVTAISSFAIPQYSAGISLRMLRFVAMFCAATFGLYGVIMFFLMLASHAVKLKSFG
VPYASPAVPYRLRDWKDFIVRMPIQMMKKRPKLLKTDDSTRQ
>Mature_522_residues
MRWWKAKTRRMIQSSNKPDKPKNEVPSVESTGYFTGDFDHDLKLAKTAMENNSDVHFREFNLGRTGIRAAIVFVEMLADQ
DLIDKHIMKSLMDDFSKEYKVELSSLSSNVTDLIKKQILSISGVSEVNHVNEVVPEVLSGAAMLLIDGSAEVLLLGTVKR
NTRNIEEPVSESLVRGARVGFTETIGTNTALLRQHGKNQNLSMVQFQVGKRAVKNLVVAYIKDIAEPGLVEEVKKRIEKI
DIDDVLESGFVEQLIEDNYLSPFPQVQSTERLDRVMSALMEGRVAILLDGTPFVLIVPVTFSMLLQSPEDYYERWLPSSL
IRIMRIGAAMISLLGPALYISFISFHPGLIPSELAISITGTRVGVPFPSLIEALIMEVAIEILREAGLRLPKPIGPAMGI
VGGIIIGEAAVQAGIVSPIMVIVVAVTAISSFAIPQYSAGISLRMLRFVAMFCAATFGLYGVIMFFLMLASHAVKLKSFG
VPYASPAVPYRLRDWKDFIVRMPIQMMKKRPKLLKTDDSTRQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 57845; Mature: 57845

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWWKAKTRRMIQSSNKPDKPKNEVPSVESTGYFTGDFDHDLKLAKTAMENNSDVHFREF
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEC
NLGRTGIRAAIVFVEMLADQDLIDKHIMKSLMDDFSKEYKVELSSLSSNVTDLIKKQILS
CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISGVSEVNHVNEVVPEVLSGAAMLLIDGSAEVLLLGTVKRNTRNIEEPVSESLVRGARVG
HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCC
FTETIGTNTALLRQHGKNQNLSMVQFQVGKRAVKNLVVAYIKDIAEPGLVEEVKKRIEKI
CHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
DIDDVLESGFVEQLIEDNYLSPFPQVQSTERLDRVMSALMEGRVAILLDGTPFVLIVPVT
CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEHHHH
FSMLLQSPEDYYERWLPSSLIRIMRIGAAMISLLGPALYISFISFHPGLIPSELAISITG
HHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
TRVGVPFPSLIEALIMEVAIEILREAGLRLPKPIGPAMGIVGGIIIGEAAVQAGIVSPIM
CEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VIVVAVTAISSFAIPQYSAGISLRMLRFVAMFCAATFGLYGVIMFFLMLASHAVKLKSFG
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VPYASPAVPYRLRDWKDFIVRMPIQMMKKRPKLLKTDDSTRQ
CCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MRWWKAKTRRMIQSSNKPDKPKNEVPSVESTGYFTGDFDHDLKLAKTAMENNSDVHFREF
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEC
NLGRTGIRAAIVFVEMLADQDLIDKHIMKSLMDDFSKEYKVELSSLSSNVTDLIKKQILS
CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISGVSEVNHVNEVVPEVLSGAAMLLIDGSAEVLLLGTVKRNTRNIEEPVSESLVRGARVG
HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCC
FTETIGTNTALLRQHGKNQNLSMVQFQVGKRAVKNLVVAYIKDIAEPGLVEEVKKRIEKI
CHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
DIDDVLESGFVEQLIEDNYLSPFPQVQSTERLDRVMSALMEGRVAILLDGTPFVLIVPVT
CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEHHHH
FSMLLQSPEDYYERWLPSSLIRIMRIGAAMISLLGPALYISFISFHPGLIPSELAISITG
HHHHHCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
TRVGVPFPSLIEALIMEVAIEILREAGLRLPKPIGPAMGIVGGIIIGEAAVQAGIVSPIM
CEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VIVVAVTAISSFAIPQYSAGISLRMLRFVAMFCAATFGLYGVIMFFLMLASHAVKLKSFG
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VPYASPAVPYRLRDWKDFIVRMPIQMMKKRPKLLKTDDSTRQ
CCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]