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The map label for this gene is yndF [H]

Identifier: 52785927

GI number: 52785927

Start: 2138924

End: 2140120

Strand: Reverse

Name: yndF [H]

Synonym: BLi02178

Alternate gene names: 52785927

Gene position: 2140120-2138924 (Counterclockwise)

Preceding gene: 52785928

Following gene: 52785926

Centisome position: 50.68

GC content: 42.94

Gene sequence:

>1197_bases
TTGAAAAAAACTAACACCATCCGTTATTTAACGAGTGTTTTACTATTGTTTCTATTAACCGGATGCTGGAGCAGCCACGA
AATTGAAGAGCTCGGCTTAACATTTGCAATGGGGATTGACAAAGGCGAGGAAACCGAACTTGAAAAAAAGTTTGACAAAG
TTGGGGGCGATTATCCGAAAAAAGACCGGATCACGATGATCTATCAATACGTGAACGAACAAGCAGCCGGTTCAAAATCG
ATTGGAGGAAGCACTGATCAAAAAACGTATATCAACGTTTATGAAACTGGAGACTCGCTTCAGCAAATTAACGCTGAAGT
AGCATTAAGACAAGACAGGCCTGTATTCAGTCCTCATTTAAAAGTGATTGTCATCGCCGCTGACCTCCTCCGCACCTATT
CGCTGTCGGAACTGCTAGATCAGCCTCTCCGCGATAATGAAATCAGGCCGAGCAGTATGGTGCTGGTCACAAGAGGGCGT
GCGAGAGACACGCTTGAGCTGAAGGAAACCGGCGAAATGCCGGCGTTTCGTCTGCTTAAAATCGTTGAAAATGAGTATAA
AGCGAAAAAAATTCTCCCTCCTGTAACGCTTGCCAAATTGACAGGCAAAATGAGATCAGGAACAAGCTATCTGCTTCAAA
ATGTCATCGGTACCGATGGAGAAATAAAATATGCGGGAGCAGCCGCAATTAACGGGAAAACCAATAAGCTGATCGGCTAT
TTGGATGAACACGATTTAGAAGGCGTGATGTGGATCATCGGAAAGGGGATTGGGGGCATGGTTAAAAGCTATGATCCGAC
AGAAAAGAAGGTGACCGCATTTGGCGTTGAATCGATTAAAAGCAACATCAAACCCATCGTCAAAGGAAACCGCCTGTCTT
TTGAAGTGAACGTAAAGTCAGAGGGGTATCTTGCGGAAAACTGGAACACGAAAGAAAAAGCTTTTGATGACAAATTTTTA
GAAAAAGTCGAAAAAACAACCGCGAAAACGGTGAAAAAATCGATGGAGGACATTACAAAAAAAATGAAAACCGAATACAA
AGCAGATCTTGCCGGATTCGGTAACGAGCTGAGGATCAAGCATCCGAGGCTTTGGGAAAAACTAAAGAAAAATTGGGATG
AGACCTTTACCGATATACCGATTACATTTCATGTTCAAATCGCGATTAAAGAATACGGAACTGTTGGGGATCAGTAA

Upstream 100 bases:

>100_bases
CTTTTTCAAATGGGAGATCTAATCGGCAACAGCGCCATCTATTTGGTCGGTCTCATCCCGCTAATGCTTCTGGTCATATC
GAAAGTGAGGAGGAAAAAGT

Downstream 100 bases:

>100_bases
CAGAAGAACTTCTAATCACGAAAGGCGGAGAAACGCGCAATGATCCGTTCCGAAGATAAAATCACGACTTCTCAGGCAAT
CGTTGTCTTGGTCAGTTATA

Product: YndF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MKKTNTIRYLTSVLLLFLLTGCWSSHEIEELGLTFAMGIDKGEETELEKKFDKVGGDYPKKDRITMIYQYVNEQAAGSKS
IGGSTDQKTYINVYETGDSLQQINAEVALRQDRPVFSPHLKVIVIAADLLRTYSLSELLDQPLRDNEIRPSSMVLVTRGR
ARDTLELKETGEMPAFRLLKIVENEYKAKKILPPVTLAKLTGKMRSGTSYLLQNVIGTDGEIKYAGAAAINGKTNKLIGY
LDEHDLEGVMWIIGKGIGGMVKSYDPTEKKVTAFGVESIKSNIKPIVKGNRLSFEVNVKSEGYLAENWNTKEKAFDDKFL
EKVEKTTAKTVKKSMEDITKKMKTEYKADLAGFGNELRIKHPRLWEKLKKNWDETFTDIPITFHVQIAIKEYGTVGDQ

Sequences:

>Translated_398_residues
MKKTNTIRYLTSVLLLFLLTGCWSSHEIEELGLTFAMGIDKGEETELEKKFDKVGGDYPKKDRITMIYQYVNEQAAGSKS
IGGSTDQKTYINVYETGDSLQQINAEVALRQDRPVFSPHLKVIVIAADLLRTYSLSELLDQPLRDNEIRPSSMVLVTRGR
ARDTLELKETGEMPAFRLLKIVENEYKAKKILPPVTLAKLTGKMRSGTSYLLQNVIGTDGEIKYAGAAAINGKTNKLIGY
LDEHDLEGVMWIIGKGIGGMVKSYDPTEKKVTAFGVESIKSNIKPIVKGNRLSFEVNVKSEGYLAENWNTKEKAFDDKFL
EKVEKTTAKTVKKSMEDITKKMKTEYKADLAGFGNELRIKHPRLWEKLKKNWDETFTDIPITFHVQIAIKEYGTVGDQ
>Mature_398_residues
MKKTNTIRYLTSVLLLFLLTGCWSSHEIEELGLTFAMGIDKGEETELEKKFDKVGGDYPKKDRITMIYQYVNEQAAGSKS
IGGSTDQKTYINVYETGDSLQQINAEVALRQDRPVFSPHLKVIVIAADLLRTYSLSELLDQPLRDNEIRPSSMVLVTRGR
ARDTLELKETGEMPAFRLLKIVENEYKAKKILPPVTLAKLTGKMRSGTSYLLQNVIGTDGEIKYAGAAAINGKTNKLIGY
LDEHDLEGVMWIIGKGIGGMVKSYDPTEKKVTAFGVESIKSNIKPIVKGNRLSFEVNVKSEGYLAENWNTKEKAFDDKFL
EKVEKTTAKTVKKSMEDITKKMKTEYKADLAGFGNELRIKHPRLWEKLKKNWDETFTDIPITFHVQIAIKEYGTVGDQ

Specific function: May be involved in spore germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKC lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008844 [H]

Pfam domain/function: PF05504 Spore_GerAC [H]

EC number: NA

Molecular weight: Translated: 44866; Mature: 44866

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTNTIRYLTSVLLLFLLTGCWSSHEIEELGLTFAMGIDKGEETELEKKFDKVGGDYPK
CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCC
KDRITMIYQYVNEQAAGSKSIGGSTDQKTYINVYETGDSLQQINAEVALRQDRPVFSPHL
CCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHEEECCCCCCCCCC
KVIVIAADLLRTYSLSELLDQPLRDNEIRPSSMVLVTRGRARDTLELKETGEMPAFRLLK
EEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEHHHCCCCHHHHHHH
IVENEYKAKKILPPVTLAKLTGKMRSGTSYLLQNVIGTDGEIKYAGAAAINGKTNKLIGY
HHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEECEEEECCCCCCEEEE
LDEHDLEGVMWIIGKGIGGMVKSYDPTEKKVTAFGVESIKSNIKPIVKGNRLSFEVNVKS
CCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECC
EGYLAENWNTKEKAFDDKFLEKVEKTTAKTVKKSMEDITKKMKTEYKADLAGFGNELRIK
CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC
HPRLWEKLKKNWDETFTDIPITFHVQIAIKEYGTVGDQ
CHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC
>Mature Secondary Structure
MKKTNTIRYLTSVLLLFLLTGCWSSHEIEELGLTFAMGIDKGEETELEKKFDKVGGDYPK
CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCC
KDRITMIYQYVNEQAAGSKSIGGSTDQKTYINVYETGDSLQQINAEVALRQDRPVFSPHL
CCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHEEECCCCCCCCCC
KVIVIAADLLRTYSLSELLDQPLRDNEIRPSSMVLVTRGRARDTLELKETGEMPAFRLLK
EEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCEEHHHCCCCHHHHHHH
IVENEYKAKKILPPVTLAKLTGKMRSGTSYLLQNVIGTDGEIKYAGAAAINGKTNKLIGY
HHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEECEEEECCCCCCEEEE
LDEHDLEGVMWIIGKGIGGMVKSYDPTEKKVTAFGVESIKSNIKPIVKGNRLSFEVNVKS
CCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECC
EGYLAENWNTKEKAFDDKFLEKVEKTTAKTVKKSMEDITKKMKTEYKADLAGFGNELRIK
CCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC
HPRLWEKLKKNWDETFTDIPITFHVQIAIKEYGTVGDQ
CHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]