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The map label for this gene is ydeT [H]

Identifier: 52785876

GI number: 52785876

Start: 2070927

End: 2071274

Strand: Reverse

Name: ydeT [H]

Synonym: BLi02124

Alternate gene names: 52785876

Gene position: 2071274-2070927 (Counterclockwise)

Preceding gene: 52785877

Following gene: 52785875

Centisome position: 49.05

GC content: 44.83

Gene sequence:

>348_bases
ATGTCCGTACAAACAAAGCTTGATTCGAAAAGCACGGTGAGCTGCATGAAGATATTGAGCGATTCTACCCGACTCTTAAT
TCTGAAACTGCTTCAGGAGAAACCATATTGCGTCTGCCAGCTTGTCGATATGTTTGAAACAAGCCAGCCCGCAATCAGCC
AGCATTTGCGAAAGCTGAAAAGCGCAAATATGATCAAGGAACAGAGAAGGGAACAATGGCGTTTTTATTCGCTTCATGAC
GACTTTCCGGAACGCGAATTGGTCCTTGCCGTTCTCAATCAGATCGATGCACACGACGAGGTTCTTCAAACCGTTAAAAG
AAAAGAAAGACCCGTTTCGTGCAGTTAA

Upstream 100 bases:

>100_bases
AGTTCCGCGCCTTGATGATCACCGCTTGATTATATAAAAGGACATTTATATAATGGATGCAACATAACGTCTGCAAAACG
CCTGATATTGGAGGAATGTC

Downstream 100 bases:

>100_bases
AACAGAAGAGGGTGGACTGTTCCCTCTTTTTCATTTGCATTCCGAATATAAGCATTGACTTATATAACAATTTTATTATA
AGATGTGTCCGGAGAGGAAA

Product: YdeT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MSVQTKLDSKSTVSCMKILSDSTRLLILKLLQEKPYCVCQLVDMFETSQPAISQHLRKLKSANMIKEQRREQWRFYSLHD
DFPERELVLAVLNQIDAHDEVLQTVKRKERPVSCS

Sequences:

>Translated_115_residues
MSVQTKLDSKSTVSCMKILSDSTRLLILKLLQEKPYCVCQLVDMFETSQPAISQHLRKLKSANMIKEQRREQWRFYSLHD
DFPERELVLAVLNQIDAHDEVLQTVKRKERPVSCS
>Mature_114_residues
SVQTKLDSKSTVSCMKILSDSTRLLILKLLQEKPYCVCQLVDMFETSQPAISQHLRKLKSANMIKEQRREQWRFYSLHDD
FPERELVLAVLNQIDAHDEVLQTVKRKERPVSCS

Specific function: Metal-responsive transcriptional regulator that represses transcription of the aseR-ydfA operon by binding specifically to its promoter. Binding of arsenite or antimonite causes the repressor to dissociate from the DNA [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 13451; Mature: 13320

Theoretical pI: Translated: 8.65; Mature: 8.65

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVQTKLDSKSTVSCMKILSDSTRLLILKLLQEKPYCVCQLVDMFETSQPAISQHLRKLK
CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
SANMIKEQRREQWRFYSLHDDFPERELVLAVLNQIDAHDEVLQTVKRKERPVSCS
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SVQTKLDSKSTVSCMKILSDSTRLLILKLLQEKPYCVCQLVDMFETSQPAISQHLRKLK
CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
SANMIKEQRREQWRFYSLHDDFPERELVLAVLNQIDAHDEVLQTVKRKERPVSCS
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]