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The map label for this gene is ykuD [C]

Identifier: 52785379

GI number: 52785379

Start: 1584083

End: 1584580

Strand: Reverse

Name: ykuD [C]

Synonym: BLi01617

Alternate gene names: 52785379

Gene position: 1584580-1584083 (Counterclockwise)

Preceding gene: 52785380

Following gene: 52785378

Centisome position: 37.53

GC content: 53.21

Gene sequence:

>498_bases
TTGCTGATGTACCAAGTCAAACCCGGAGAAACCCTTGAAAGCATCGCCGCCGATTTCAGAACGACCCGGCAGGCGTTGCT
GCAGGCGAATCCTGGCTTAAACGGCGGCCAAGTGTCCGCGGGCCAGTCGATTATCATTCCCGGCATCAGAAATCCGGACA
CAATTCCATACCGGATTGCCGTGTCTCTCAACGGAAGAACGCTCAGATTGTATGAGCGAGACAGACTTGTAAAAACATAT
CCGATTGCCGTCGGAAAAATCCTCACACAGACGCCGAGAGGCGAATTTGTCATCGTCAACCGGCAGCCAAATCCGGGCGG
CCCGTTCGGCGCCTACTGGCTGAGCCTGTCAAAACAGCACTACGGCATCCATGGAACGAATAACCCTTCGTCAATTGGCA
AAGCTGTTTCAAGGGGATGTATCCGCATGCACAATCGGGATGTTCTGGAACTTGCTTCTATCGTACCCAACGGAACCCGA
GTGTCCATTACACCTTAG

Upstream 100 bases:

>100_bases
TCCCCATCAAAAAAACGAAACTTCCTCAGCCTCTTTCCGTCTATATATTAGCAGCGGAAAAGGCTCTCTTTTCGTTTTTG
AAAAGGAGATGTGCTGATTA

Downstream 100 bases:

>100_bases
ACGAGTACATTTCCAGACAAATGCAATTTGAACAATACAACATCTTGTATTAAGATATAATGGGACCTTTAGGGTAAGGA
GCGTATATATGGATCTTTTT

Product: YkuD

Products: NA

Alternate protein names: Spore protein YkuD homolog

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MLMYQVKPGETLESIAADFRTTRQALLQANPGLNGGQVSAGQSIIIPGIRNPDTIPYRIAVSLNGRTLRLYERDRLVKTY
PIAVGKILTQTPRGEFVIVNRQPNPGGPFGAYWLSLSKQHYGIHGTNNPSSIGKAVSRGCIRMHNRDVLELASIVPNGTR
VSITP

Sequences:

>Translated_165_residues
MLMYQVKPGETLESIAADFRTTRQALLQANPGLNGGQVSAGQSIIIPGIRNPDTIPYRIAVSLNGRTLRLYERDRLVKTY
PIAVGKILTQTPRGEFVIVNRQPNPGGPFGAYWLSLSKQHYGIHGTNNPSSIGKAVSRGCIRMHNRDVLELASIVPNGTR
VSITP
>Mature_165_residues
MLMYQVKPGETLESIAADFRTTRQALLQANPGLNGGQVSAGQSIIIPGIRNPDTIPYRIAVSLNGRTLRLYERDRLVKTY
PIAVGKILTQTPRGEFVIVNRQPNPGGPFGAYWLSLSKQHYGIHGTNNPSSIGKAVSRGCIRMHNRDVLELASIVPNGTR
VSITP

Specific function: Probable enzyme that may play an important role in cell wall biology

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Spore wall. Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat (By similarity)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat

Homologues:

Organism=Escherichia coli, GI1788299, Length=189, Percent_Identity=31.7460317460317, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787968, Length=194, Percent_Identity=31.4432989690722, Blast_Score=61, Evalue=3e-11,
Organism=Escherichia coli, GI1787356, Length=190, Percent_Identity=31.0526315789474, Blast_Score=60, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YKUD_BACLD (Q65K99)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_078796.1
- RefSeq:   YP_091208.1
- ProteinModelPortal:   Q65K99
- SMR:   Q65K99
- STRING:   Q65K99
- EnsemblBacteria:   EBBACT00000054910
- EnsemblBacteria:   EBBACT00000059463
- GeneID:   3030725
- GeneID:   3097783
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi01617
- KEGG:   bli:BL03652
- NMPDR:   fig|279010.5.peg.1289
- eggNOG:   COG1376
- GeneTree:   EBGT00070000032370
- HOGENOM:   HBG295778
- OMA:   YKTYKVA
- ProtClustDB:   CLSK887215
- BioCyc:   BLIC279010-1:BLI01617-MONOMER
- BioCyc:   BLIC279010:BL03652-MONOMER
- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490
- SMART:   SM00257

Pfam domain/function: PF01476 LysM; PF03734 YkuD

EC number: NA

Molecular weight: Translated: 18018; Mature: 18018

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMYQVKPGETLESIAADFRTTRQALLQANPGLNGGQVSAGQSIIIPGIRNPDTIPYRIA
CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECCCCCCCCCCEEEE
VSLNGRTLRLYERDRLVKTYPIAVGKILTQTPRGEFVIVNRQPNPGGPFGAYWLSLSKQH
EEECCCEEEEEECCCEEEEECHHHHHHHHCCCCCCEEEEECCCCCCCCHHHEEEEECCCC
YGIHGTNNPSSIGKAVSRGCIRMHNRDVLELASIVPNGTRVSITP
CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MLMYQVKPGETLESIAADFRTTRQALLQANPGLNGGQVSAGQSIIIPGIRNPDTIPYRIA
CEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCEEEECCCCCCCCCCEEEE
VSLNGRTLRLYERDRLVKTYPIAVGKILTQTPRGEFVIVNRQPNPGGPFGAYWLSLSKQH
EEECCCEEEEEECCCEEEEECHHHHHHHHCCCCCCEEEEECCCCCCCCHHHEEEEECCCC
YGIHGTNNPSSIGKAVSRGCIRMHNRDVLELASIVPNGTRVSITP
CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA