Click here to switch to the map view.

The map label for this gene is yjcG

Identifier: 52785054

GI number: 52785054

Start: 1288691

End: 1289200

Strand: Reverse

Name: yjcG

Synonym: BLi01284

Alternate gene names: NA

Gene position: 1289200-1288691 (Counterclockwise)

Preceding gene: 52785055

Following gene: 52785053

Centisome position: 30.53

GC content: 45.1

Gene sequence:

>510_bases
ATGAAATACGGTATTGTGCTATTTCCATCAAAAAAACTTCAGGACATTGCAAATTCCTACCGAAAACGCTATGACCCGAA
TTACGCTTTAATTCCGCCCCACCTTACATTAAGAACGCCTTTTGAAGTGTCTGAAGACGAGATCTCAGGCGTCGTCCGAC
ACTTGAGAGAGCTTTCAAAAGAGCTGAAACCGGTCACGCTGAAGATTACAAAATTCAGTTCCTTTGCCCCCGTCAATAAT
GTCATTTACATGAAAGCCGAACCGACAGAGGAATTGATGCAGCTTCATGAAAAAATGTACAGCGGCGTTTTGGAAGACAA
ACCCGAATACGCGTTTGTTCCCCATGTCACAGTCGCACAAAAGCTGTCAGATGATGAGCATTCCGACGTCCTCGGCACGC
TGAAAATGAGAGACGCGTCACACGAAGAAGTCATCGACCGCTTTCACCTGCTTTACCAATTGGACAACGGATCATGGACC
GTCTATGAAACTTTTATTTTAGGAGCGTGA

Upstream 100 bases:

>100_bases
CCGCTCATCACCCCCGCTTTAAAAAAAATGCTGTAGCTCTCTGTATATCGGCCCATCTTTGATATACTAAACCATATCAA
TTGTTTAAGGAGGGAACAAA

Downstream 100 bases:

>100_bases
AGAAAGCCAGTGGAAGCCGTCATTGTGAAGAATCAACAACAGCTTGAAGACGCCTTCTTTGTTAGAAAGGAAGTCTTTAT
CAAGGAGCAGCACGTATCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MKYGIVLFPSKKLQDIANSYRKRYDPNYALIPPHLTLRTPFEVSEDEISGVVRHLRELSKELKPVTLKITKFSSFAPVNN
VIYMKAEPTEELMQLHEKMYSGVLEDKPEYAFVPHVTVAQKLSDDEHSDVLGTLKMRDASHEEVIDRFHLLYQLDNGSWT
VYETFILGA

Sequences:

>Translated_169_residues
MKYGIVLFPSKKLQDIANSYRKRYDPNYALIPPHLTLRTPFEVSEDEISGVVRHLRELSKELKPVTLKITKFSSFAPVNN
VIYMKAEPTEELMQLHEKMYSGVLEDKPEYAFVPHVTVAQKLSDDEHSDVLGTLKMRDASHEEVIDRFHLLYQLDNGSWT
VYETFILGA
>Mature_169_residues
MKYGIVLFPSKKLQDIANSYRKRYDPNYALIPPHLTLRTPFEVSEDEISGVVRHLRELSKELKPVTLKITKFSSFAPVNN
VIYMKAEPTEELMQLHEKMYSGVLEDKPEYAFVPHVTVAQKLSDDEHSDVLGTLKMRDASHEEVIDRFHLLYQLDNGSWT
VYETFILGA

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0477 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1284_BACLD (Q65L74)

Other databases:

- EMBL:   CP000002
- EMBL:   AE017333
- RefSeq:   YP_078483.1
- RefSeq:   YP_090883.1
- ProteinModelPortal:   Q65L74
- SMR:   Q65L74
- STRING:   Q65L74
- EnsemblBacteria:   EBBACT00000057425
- EnsemblBacteria:   EBBACT00000060221
- GeneID:   3030303
- GeneID:   3099310
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi01284
- KEGG:   bli:BL02661
- NMPDR:   fig|279010.5.peg.2500
- eggNOG:   COG1514
- GeneTree:   EBGT00050000002956
- HOGENOM:   HBG313713
- OMA:   ANSYRKR
- ProtClustDB:   PRK13679
- BioCyc:   BLIC279010-1:BLI01284-MONOMER
- BioCyc:   BLIC279010:BL02661-MONOMER
- GO:   GO:0005622
- HAMAP:   MF_01444
- InterPro:   IPR014051
- InterPro:   IPR009097
- InterPro:   IPR022932

Pfam domain/function: PF02834 2_5_RNA_ligase; SSF55144 Cyc_nuc_Pdiester

EC number: NA

Molecular weight: Translated: 19530; Mature: 19530

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYGIVLFPSKKLQDIANSYRKRYDPNYALIPPHLTLRTPFEVSEDEISGVVRHLRELSK
CCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHH
ELKPVTLKITKFSSFAPVNNVIYMKAEPTEELMQLHEKMYSGVLEDKPEYAFVPHVTVAQ
HCCCEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHH
KLSDDEHSDVLGTLKMRDASHEEVIDRFHLLYQLDNGSWTVYETFILGA
HCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHEEECCCCEEEEEEEEECC
>Mature Secondary Structure
MKYGIVLFPSKKLQDIANSYRKRYDPNYALIPPHLTLRTPFEVSEDEISGVVRHLRELSK
CCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCHHHHHHHHHHHHHHHH
ELKPVTLKITKFSSFAPVNNVIYMKAEPTEELMQLHEKMYSGVLEDKPEYAFVPHVTVAQ
HCCCEEEEEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHH
KLSDDEHSDVLGTLKMRDASHEEVIDRFHLLYQLDNGSWTVYETFILGA
HCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHEEECCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA